View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17255_high_2 (Length: 665)

Name: NF17255_high_2
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17255_high_2
NF17255_high_2
[»] chr5 (9 HSPs)
chr5 (17-409)||(14818566-14818960)
chr5 (499-658)||(14818238-14818397)
chr5 (408-499)||(14818420-14818511)
chr5 (542-595)||(38806846-38806900)
chr5 (541-592)||(19737483-19737535)
chr5 (541-591)||(28296334-28296385)
chr5 (541-595)||(38749561-38749616)
chr5 (541-595)||(43208272-43208327)
chr5 (547-591)||(32444778-32444823)
[»] chr7 (10 HSPs)
chr7 (515-589)||(38134410-38134485)
chr7 (541-591)||(2525846-2525897)
chr7 (537-591)||(36013800-36013856)
chr7 (540-591)||(20427637-20427689)
chr7 (540-595)||(44172888-44172944)
chr7 (540-575)||(28515032-28515067)
chr7 (562-595)||(3142076-3142109)
chr7 (555-588)||(30606069-30606102)
chr7 (541-593)||(44020981-44021034)
chr7 (540-591)||(21247738-21247790)
[»] chr4 (14 HSPs)
chr4 (541-591)||(56049883-56049933)
chr4 (541-595)||(18513239-18513294)
chr4 (544-589)||(47513323-47513368)
chr4 (537-580)||(10546150-10546194)
chr4 (541-588)||(14465299-14465347)
chr4 (540-585)||(5654599-5654645)
chr4 (544-593)||(11110212-11110262)
chr4 (542-591)||(25390888-25390938)
chr4 (555-593)||(40224498-40224536)
chr4 (543-591)||(33950144-33950193)
chr4 (541-593)||(43299971-43300024)
chr4 (541-593)||(43300622-43300675)
chr4 (520-591)||(5225615-5225687)
chr4 (555-595)||(37496725-37496765)
[»] chr3 (8 HSPs)
chr3 (540-591)||(20691324-20691376)
chr3 (541-591)||(40150573-40150624)
chr3 (540-591)||(27513664-27513717)
chr3 (546-593)||(23271994-23272042)
chr3 (541-591)||(40697860-40697911)
chr3 (542-591)||(35160727-35160777)
chr3 (546-575)||(4216478-4216507)
chr3 (540-595)||(8039211-8039267)
[»] chr8 (10 HSPs)
chr8 (540-591)||(5307066-5307117)
chr8 (540-588)||(10474424-10474472)
chr8 (541-589)||(14692466-14692514)
chr8 (540-590)||(3508057-3508108)
chr8 (542-591)||(12985399-12985449)
chr8 (541-589)||(1925994-1926042)
chr8 (540-595)||(28819196-28819252)
chr8 (543-582)||(29198490-29198530)
chr8 (543-590)||(31236580-31236628)
chr8 (555-591)||(31548295-31548331)
[»] chr2 (10 HSPs)
chr2 (541-591)||(18570978-18571029)
chr2 (542-593)||(45166418-45166470)
chr2 (556-595)||(14373425-14373464)
chr2 (541-591)||(31026701-31026752)
chr2 (541-591)||(34006993-34007044)
chr2 (541-593)||(2846909-2846962)
chr2 (547-591)||(45000848-45000893)
chr2 (542-593)||(4229408-4229460)
chr2 (540-591)||(9626947-9626996)
chr2 (555-591)||(37402086-37402122)
[»] chr1 (5 HSPs)
chr1 (538-575)||(498415-498452)
chr1 (541-591)||(19637774-19637825)
chr1 (543-593)||(30847720-30847771)
chr1 (541-593)||(11412768-11412821)
chr1 (540-591)||(7988453-7988505)
[»] scaffold0011 (1 HSPs)
scaffold0011 (521-591)||(240023-240094)
[»] chr6 (8 HSPs)
chr6 (545-591)||(9024178-9024225)
chr6 (541-594)||(29711268-29711322)
chr6 (540-586)||(33135183-33135229)
chr6 (543-591)||(9617442-9617491)
chr6 (540-575)||(2140499-2140535)
chr6 (544-591)||(9629392-9629440)
chr6 (546-589)||(10157995-10158039)
chr6 (555-591)||(32980979-32981015)
[»] scaffold0598 (1 HSPs)
scaffold0598 (541-580)||(8066-8106)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 14818960 - 14818566
Alignment:
Q  17 aacatcactatctcatcatggagtcccgcatgtctttcggtgtgaaatgacacgatccttacggcaggttcgttcaaaggacatgtatctcaattctcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14818960 aacatcactatctcatcatggagtcccgcatgtctttcggtgtgaaatgacacgatccttacggcaggttcattcaaaggacatgtatctcaattctcat 14818861  T
Q  117 cagctgcatcattcactttatttctcacaacaaaagccttcaacatatcaaggtaattatactattccacgtcttccttcaaaaaatactattccaagtc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14818860 cagctgcatcattcactttatttctcacaacaaaagccttcaacatatcaaggtaattatactattccacgtcttccttcaaaaaatactattccaactc 14818761  T
Q  217 tatcttatagaagtatgttatg--tagatactgtcccccaagttgtattgctaaaagggtagtttaattttattcttgtagcaagcaatgaaattggtgc 314  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14818760 tatcttatagaagtatgttatgtatagatactgtcccccaagttgtattgctaagagggtagtttaattttattcttgtagcaagcaatgaaattggtgc 14818661  T
Q  315 tattctgtgggtttgaattctgttgttcatgaaggaattatcccttgactgggttaaatgagaatttccactaaaatttatctgatttgtttaaa 409  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14818660 tattctgtgggtttgaattctgttgttcttgaaggaattatcccttgactgggttaaatgagaatttccactaaaatttatctgatttgtttaaa 14818566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 499 - 658
Target Start/End: Complemental strand, 14818397 - 14818238
Alignment:
Q  499 acggacactggaaaacgatacggacatggacatgttcgcaatgataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgttgtgctt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14818397 acggacactggaaaacgatacggacatggacatgttcgcaatgataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgttgtgctt 14818298  T
Q  599 catagtgtgtcattgttcccacccctctaagggaaaaagaagataataaatctccctttg 658  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14818297 catagtgtttcattgttcccacccctctaagggaaaaagaagataataaatctccctttg 14818238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 408 - 499
Target Start/End: Complemental strand, 14818511 - 14818420
Alignment:
Q  408 aactattgattgccctgatattcaagaaggctactgaagaacatgatatatgtaatattaacatgaacgtcttccttattgtttgaaagata 499  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  14818511 aactattgattgccctgatattcaagaaggctactgaagaacattatatatgtaatattaacttgaacgtgttccttattgtttgaaagata 14818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 38806900 - 38806846
Alignment:
Q  542 ataataatttgagaa-atgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||    
T  38806900 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctgtg 38806846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 19737535 - 19737483
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgtt 592  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||||||||||    
T  19737535 gataataatttgagaaaattacataattcaatgcaatcatatgtgtcggtgtt 19737483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 28296334 - 28296385
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||| |||||    
T  28296334 gataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgt 28296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 38749616 - 38749561
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    ||||||||||||| ||| ||||||||||||||||||  |||||||| |||||||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtg 38749561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 43208327 - 43208272
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||| |||||||||||| |||||||||||||||||| ||||| |||| ||||||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtg 43208272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 591
Target Start/End: Original strand, 32444778 - 32444823
Alignment:
Q  547 aatttgagaa-atgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||    
T  32444778 aatttgagaagatgacataattcaatgtaatcaaatgtgtcggtgt 32444823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 515 - 589
Target Start/End: Complemental strand, 38134485 - 38134410
Alignment:
Q  515 gatacggacatggacatgttcgcaatgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggt 589  Q
    ||||||||||||||||||||  ||  ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  38134485 gatacggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 2525897 - 2525846
Alignment:
Q  541 gataataatttgag-aaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  2525897 gataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgt 2525846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 36013856 - 36013800
Alignment:
Q  537 caatgataataatttgagaaa--tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||||||||  |||||||||||||||||| || | ||||||||||    
T  36013856 caatgataataatttgagaaaaatgacataattcaatgtaatcacacgtgtcggtgt 36013800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 20427689 - 20427637
Alignment:
Q  540 tgataataatttgagaa-atgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||| |||||||| || ||||||| |||||||||||||||    
T  20427689 tgataataatttgagaagatgacatatttaaatgtaatcatatgtgtcggtgt 20427637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 595
Target Start/End: Complemental strand, 44172944 - 44172888
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||  ||||||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtg 44172888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 575
Target Start/End: Complemental strand, 28515067 - 28515032
Alignment:
Q  540 tgataataatttgagaaatgacataattcaatgtaa 575  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28515067 tgataataatttgaggaatgacataattcaatgtaa 28515032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 595
Target Start/End: Complemental strand, 3142109 - 3142076
Alignment:
Q  562 ataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||||||||||||| |||||||||||||||||||    
T  3142109 ataattcaatgtaatcatatgtgtcggtgttgtg 3142076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 588
Target Start/End: Complemental strand, 30606102 - 30606069
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcgg 588  Q
    ||||||||||||||||||||| ||||||||||||    
T  30606102 aaatgacataattcaatgtaaccatatgtgtcgg 30606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 44020981 - 44021034
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||||||| ||| | |||||||||||||||| ||||| |||||||||||    
T  44020981 gataataatttgaaaaaattacataattcaatgtaaccatatctgtcggtgttg 44021034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 21247790 - 21247738
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||||| |||| ||||||||||||| ||| ||||| |||||    
T  21247790 tgataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgt 21247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 56049883 - 56049933
Alignment:
Q  541 gataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  56049883 gataataatttgagaaatgacatagttcaatgtaatcatatgtgtcggtgt 56049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 18513294 - 18513239
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtg 18513239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 589
Target Start/End: Original strand, 47513323 - 47513368
Alignment:
Q  544 aataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 589  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||    
T  47513323 aataatttgagaaatgacataatttaatgtaatcatacgtgtcggt 47513368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 580
Target Start/End: Original strand, 10546150 - 10546194
Alignment:
Q  537 caatgataataatttgagaaa-tgacataattcaatgtaaacata 580  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||    
T  10546150 caatgataataatttgagaaaatgacataattcaatgtaatcata 10546194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 588
Target Start/End: Complemental strand, 14465347 - 14465299
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcgg 588  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  14465347 gataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 585
Target Start/End: Complemental strand, 5654645 - 5654599
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgt 585  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||    
T  5654645 tgataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 11110212 - 11110262
Alignment:
Q  544 aataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||| |||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgtgtcgatgttg 11110262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 591
Target Start/End: Complemental strand, 25390938 - 25390888
Alignment:
Q  542 ataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||| ||||| |||||||||||||| ||| |||||||||||||||    
T  25390938 ataataattttagaaaatgacataattcaatataaccatatgtgtcggtgt 25390888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 593
Target Start/End: Complemental strand, 40224536 - 40224498
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  40224536 aaatgacataatttaatgtaatcatatgtgtcggtgttg 40224498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 33950144 - 33950193
Alignment:
Q  543 taataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||| | |||||||| ||||||| |||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgt 33950193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 43300024 - 43299971
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||||||||||| | |||||||||||||||| ||||| || ||||||||    
T  43300024 gataataatttgagaaaattacataattcaatgtaatcatatctgccggtgttg 43299971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 43300622 - 43300675
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||||||||||| | |||||||||||||||| ||||| ||||| |||||    
T  43300622 gataataatttgagaaaattacataattcaatgtaatcatatttgtcgctgttg 43300675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 591
Target Start/End: Complemental strand, 5225687 - 5225615
Alignment:
Q  520 ggacatggacatgttcgcaatgataataatttgaga-aatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||  ||   || ||||||||||| ||||||||||||||||| ||  ||||||||||||||    
T  5225687 ggacatggacatgttgacacatattataatttgagataatgacataattcaatgcaataatatgtgtcggtgt 5225615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 595
Target Start/End: Original strand, 37496725 - 37496765
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  37496725 aaatgacataattcaatgtaatcacaagtgtcggtgttgtg 37496765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 591
Target Start/End: Original strand, 20691324 - 20691376
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  20691324 tgataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 40150624 - 40150573
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgt 40150573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 27513717 - 27513664
Alignment:
Q  540 tgataataatttgagaaa--tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  27513717 tgataataatttgagaaaaatgacattattcaatgtaatcatatgtgtcggtgt 27513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 593
Target Start/End: Complemental strand, 23272042 - 23271994
Alignment:
Q  546 taatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgttg 23271994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 40697911 - 40697860
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||    
T  40697911 gataataatatgagaaaatgacataattcaatctaaccatatgtgtcggtgt 40697860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 35160727 - 35160777
Alignment:
Q  542 ataataatttgag-aaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||||||||    
T  35160727 ataataatttgagtaaataacataattcaatgtagccatatgtgtcggtgt 35160777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 575
Target Start/End: Complemental strand, 4216507 - 4216478
Alignment:
Q  546 taatttgagaaatgacataattcaatgtaa 575  Q
    ||||||||||||||||||||||||||||||    
T  4216507 taatttgagaaatgacataattcaatgtaa 4216478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 8039211 - 8039267
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||| ||||||||||||| || ||| ||||||||||| |||| ||||||||||||||    
T  8039211 tgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtg 8039267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 591
Target Start/End: Original strand, 5307066 - 5307117
Alignment:
Q  540 tgataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||| |||||||||||||||||| || |||| ||||||||||    
T  5307066 tgataataatttgaaaaatgacataattcaatgaaatcataagtgtcggtgt 5307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 10474472 - 10474424
Alignment:
Q  540 tgataataatttgagaaatgacataattcaatgtaaacatatgtgtcgg 588  Q
    ||||||||||||||||||||| |||||||||| ||| || |||||||||    
T  10474472 tgataataatttgagaaatgatataattcaatttaatcacatgtgtcgg 10474424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 14692466 - 14692514
Alignment:
Q  541 gataataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 589  Q
    ||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  14692466 gataataatttgagaaatgacataattcagtgtaactataggtgtcggt 14692514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 590
Target Start/End: Original strand, 3508057 - 3508108
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtg 590  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  3508057 tgataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 12985399 - 12985449
Alignment:
Q  542 ataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||| | |||||||||||||||| ||||| |||||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 1925994 - 1926042
Alignment:
Q  541 gataataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 589  Q
    ||||||| ||||| ||| ||||||||||||||||| ||||| |||||||    
T  1925994 gataatagtttgaaaaaggacataattcaatgtaatcatatatgtcggt 1926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 28819196 - 28819252
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||||||||||||||||| || ||||| |||||| || ||||||||||||| |||||    
T  28819196 tgataataatttgagaaaatggcataactcaatgcaatcatatgtgtcggttttgtg 28819252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 582
Target Start/End: Complemental strand, 29198530 - 29198490
Alignment:
Q  543 taataatttgagaaa-tgacataattcaatgtaaacatatg 582  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatg 29198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 590
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  543 taataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtg 590  Q
    ||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 591
Target Start/End: Complemental strand, 31548331 - 31548295
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31548331 aaatgacataattcaatgtaatcacatgtgtcggtgt 31548295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 18570978 - 18571029
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 593
Target Start/End: Complemental strand, 45166470 - 45166418
Alignment:
Q  542 ataataatttgag-aaatgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    |||||||||| || |||||||||| |||||||||| |||||||||||||||||    
T  45166470 ataataattttagcaaatgacatagttcaatgtaaccatatgtgtcggtgttg 45166418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 595
Target Start/End: Complemental strand, 14373464 - 14373425
Alignment:
Q  556 aatgacataattcaatgtaaacatatgtgtcggtgttgtg 595  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  14373464 aatgacataattcaatgtaatcacatgtgtcggtgttgtg 14373425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 31026701 - 31026752
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||| ||||| |||||||||||||||||| ||||| |||||||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 34007044 - 34006993
Alignment:
Q  541 gataataatttgagaaat-gacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||||||| ||||||||||| ||||| |||| ||||||||||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgt 34006993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 2846962 - 2846909
Alignment:
Q  541 gataataatttgaga-aatgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    |||||||||| |||| |||||||||||||||||||| |||||||  ||||||||    
T  2846962 gataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttg 2846909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 591
Target Start/End: Complemental strand, 45000893 - 45000848
Alignment:
Q  547 aatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||||    
T  45000893 aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgt 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 593
Target Start/End: Complemental strand, 4229460 - 4229408
Alignment:
Q  542 ataataatttgaga-aatgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    |||||||||| ||| |||||||||||||| ||||| ||||||||||| |||||    
T  4229460 ataataatttaagagaatgacataattcagtgtaatcatatgtgtcgatgttg 4229408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 591
Target Start/End: Original strand, 9626947 - 9626996
Alignment:
Q  540 tgataataatttgagaaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||| ||||||||||||| |||||  ||| ||||||||||||    
T  9626947 tgataataatttgaaaaatgacataattgaatgt--acacatgtgtcggtgt 9626996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 591
Target Start/End: Complemental strand, 37402122 - 37402086
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  37402122 aaatgacataattcaatgtaatcatatgtgtcagtgt 37402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 498452 - 498415
Alignment:
Q  538 aatgataataatttgagaaatgacataattcaatgtaa 575  Q
    |||||||||||||||| |||||||||||||||||||||    
T  498452 aatgataataatttgaaaaatgacataattcaatgtaa 498415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 19637774 - 19637825
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||| ||||| |||||| ||||||||||| |||||||||||||||    
T  19637774 gataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgt 19637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 30847771 - 30847720
Alignment:
Q  543 taataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||| ||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 11412821 - 11412768
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttg 593  Q
    ||||||||| ||||||| |||||||||||||||| | |||| ||||||||||||    
T  11412821 gataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtgttg 11412768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 7988505 - 7988453
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||| ||||| |||||||||||||||||| |||| |||| |||||    
T  7988505 tgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgt 7988453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 240094 - 240023
Alignment:
Q  521 gacatggacatgttcgcaatgataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||| |||||||||  |||  |||||||||||||||| | | |||||||||||||| |||||||||||||||    
T  240094 gacacggacatgttgacaactataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgt 240023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 9024225 - 9024178
Alignment:
Q  545 ataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 9024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 594
Target Start/End: Original strand, 29711268 - 29711322
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgttgt 594  Q
    ||||||||||||||||| |||||||||||| | ||| || |||||||||||||||    
T  29711268 gataataatttgagaaaatgacataattcattataaccacatgtgtcggtgttgt 29711322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 586
Target Start/End: Original strand, 33135183 - 33135229
Alignment:
Q  540 tgataataatttgagaaatgacataattcaatgtaaacatatgtgtc 586  Q
    ||||||| ||||||||||| |||||||||||||| | ||||||||||    
T  33135183 tgataatgatttgagaaataacataattcaatgtgatcatatgtgtc 33135229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 9617442 - 9617491
Alignment:
Q  543 taataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||| | ||||||||||||||||  ||||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 575
Target Start/End: Complemental strand, 2140535 - 2140499
Alignment:
Q  540 tgataataatttgagaaa-tgacataattcaatgtaa 575  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2140535 tgataataatttgagaaaatgacataattcaatgtaa 2140499  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 9629392 - 9629440
Alignment:
Q  544 aataatttgagaaa-tgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    |||||||||||||| | ||||||||||||||||  ||||||||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 589
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  546 taatttgagaaa-tgacataattcaatgtaaacatatgtgtcggt 589  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 591
Target Start/End: Original strand, 32980979 - 32981015
Alignment:
Q  555 aaatgacataattcaatgtaaacatatgtgtcggtgt 591  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  32980979 aaatgacataattcaatataatcatatgtgtcggtgt 32981015  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 580
Target Start/End: Complemental strand, 8106 - 8066
Alignment:
Q  541 gataataatttgagaaa-tgacataattcaatgtaaacata 580  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  8106 gataataatttgagaaaatgacataattcagtgtaaacata 8066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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