View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_high_6 (Length: 456)
Name: NF17255_high_6
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 35919675 - 35919808
Alignment:
| Q |
102 |
tctaatttaattaaaattgggtgcatatgaacattatcttaccatatagttaaaagtaaaatatatttattttattcttaattagataaatgaacacaca |
201 |
Q |
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| T |
35919675 |
tctaatttaattaaaattgggtgcatatgaacattatcttaccatatagttaaaagtaaaatatatttattttattcttaattagataaatgaacacaca |
35919774 |
T |
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| Q |
202 |
cagacataagtatattttaacatgttaaaattaa |
235 |
Q |
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| T |
35919775 |
cagacataagtatattttaacatgttaaaattaa |
35919808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 35919918 - 35920023
Alignment:
| Q |
333 |
aacatttattcttttatttgataaaatttatgtagaattcacacatagctcatacataaagtgacgagatttatgtgaattttactcgataagagagtga |
432 |
Q |
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| T |
35919918 |
aacatttattcttttatttgatgaaacttatgtagaatccacacatagctcatacataaagtgacgagatttatatgaattttactcaataaaagagtga |
35920017 |
T |
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| Q |
433 |
atatta |
438 |
Q |
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|||||| |
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| T |
35920018 |
atatta |
35920023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 364
Target Start/End: Original strand, 42396552 - 42396580
Alignment:
| Q |
336 |
atttattcttttatttgataaaatttatg |
364 |
Q |
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| T |
42396552 |
atttattcttttatttgataaaatttatg |
42396580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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