View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_high_7 (Length: 431)
Name: NF17255_high_7
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 43069175 - 43068731
Alignment:
| Q |
1 |
tgtttctgtaatttggtctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacat |
100 |
Q |
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| T |
43069175 |
tgtttctgtaatttggtctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacat |
43069076 |
T |
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| Q |
101 |
agacaatcctctcctgcaaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaat---------------- |
184 |
Q |
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| T |
43069075 |
agacaatcctctcctgcaaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaattatatatatagcaaaa |
43068976 |
T |
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| Q |
185 |
-----gcatcatgcatgagaaatat----tgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatg |
275 |
Q |
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| T |
43068975 |
aaaatgcatcatgcatgagaaatatatattgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatg |
43068876 |
T |
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| Q |
276 |
atgaagatgacaaactagaagttgaagaggatacttcttgatcatcatctaactctggtgaagaagatgaacacatagaattcattgaatcttctgtaat |
375 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43068875 |
atgaagatgacaaactagaagttgaagaggatgcttcttgatcatcatctaactctgatgaagaagatgaacacatagaattcattgaatcttctgtaat |
43068776 |
T |
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| Q |
376 |
agatccattcgaaattgaatcagttacatcatcatcatccacatc |
420 |
Q |
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| T |
43068775 |
agatccattcgaaattgaatcagttacatcatcatcatccacatc |
43068731 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
75 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
125 |
Q |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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