View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17255_high_9 (Length: 366)

Name: NF17255_high_9
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17255_high_9
NF17255_high_9
[»] chr6 (16 HSPs)
chr6 (15-348)||(2929724-2930059)
chr6 (15-348)||(2996703-2997036)
chr6 (16-315)||(2935047-2935349)
chr6 (29-345)||(2937878-2938194)
chr6 (30-343)||(2974427-2974740)
chr6 (54-346)||(2927577-2927869)
chr6 (71-346)||(3003174-3003445)
chr6 (24-345)||(2983284-2983605)
chr6 (71-315)||(2952384-2952624)
chr6 (15-345)||(2964927-2965280)
chr6 (29-345)||(2658311-2658645)
chr6 (15-119)||(2954726-2954829)
chr6 (129-345)||(2979306-2979521)
chr6 (179-238)||(2954666-2954725)
chr6 (23-74)||(2986421-2986472)
chr6 (30-62)||(2952657-2952689)
[»] scaffold0024 (2 HSPs)
scaffold0024 (16-348)||(34573-34905)
scaffold0024 (286-345)||(44532-44591)
[»] chr7 (1 HSPs)
chr7 (16-346)||(3339442-3339775)
[»] chr3 (3 HSPs)
chr3 (71-345)||(49613854-49614128)
chr3 (72-315)||(49618860-49619102)
chr3 (82-196)||(49617650-49617758)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 2930059 - 2929724
Alignment:
Q  15 gataatactaatagcaataattatgaactaaacaatgaaagaaatca--cttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 112  Q
    |||||||  |||| ||||||||||||||| |||||| ||||||||||  || |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  2930059 gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2929960  T
Q  113 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 212  Q
    ||||| ||||||||| | ||| |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  2929959 gagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc 2929860  T
Q  213 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 312  Q
    | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2929859 taacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacag 2929760  T
Q  313 aatgattgtctccaaaccaattttccagtatttctt 348  Q
    ||||||||||||||||||||||||||||||||||||    
T  2929759 aatgattgtctccaaaccaattttccagtatttctt 2929724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 2996703 - 2997036
Alignment:
Q  15 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  2996703 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtga 2996802  T
Q  115 gaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctt 214  Q
    |||||||||||| |||||| |||| |||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |    
T  2996803 gaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcct 2996902  T
Q  215 acaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaa 314  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| || |||| |||||||||||||||||| |||||||||||||    
T  2996903 acaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaa 2997002  T
Q  315 tgattgtctccaaaccaattttccagtatttctt 348  Q
    | | ||||||||| ||||||||||||||||||||    
T  2997003 tcactgtctccaagccaattttccagtatttctt 2997036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 2935349 - 2935047
Alignment:
Q  16 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt---actacttgcaagactgaacaaactgattgaagtaaagt 112  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||   || ||||||||||| |||||||||||||||||||||||    
T  2935349 ataatactaatagaaataattatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2935250  T
Q  113 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 212  Q
    ||||| ||||||||| ||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2935249 gagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattc 2935150  T
Q  213 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 312  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||||||||| |||||||||||    
T  2935149 ttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacag 2935050  T
Q  313 aat 315  Q
    |||    
T  2935049 aat 2935047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 2938194 - 2937878
Alignment:
Q  29 caataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaa 128  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||     
T  2938194 caataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaag 2938095  T
Q  129 attcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcattta 228  Q
    ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||||  | || ||||||||||    
T  2938094 attccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcattta 2937995  T
Q  229 agtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaa 328  Q
    | |||||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||  ||||||||||||| | |||||||||     
T  2937994 attctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaaattagccacagaatcactgtctccaag 2937895  T
Q  329 ccaattttccagtattt 345  Q
    |||||||||||||||||    
T  2937894 ccaattttccagtattt 2937878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 2974740 - 2974427
Alignment:
Q  30 aataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaa 129  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||  ||||| || ||||||||||||||| ||||    
T  2974740 aataattatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaa 2974641  T
Q  130 ttcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaa 229  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| ||    
T  2974640 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaa 2974541  T
Q  230 gtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaac 329  Q
     |||||||| ||||||||||| ||||||||||||||||||| | |||||||||  | |||||||||||| | | |||| ||||||| | ||||||||| |    
T  2974540 ttctttgcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataagatagcaacagaatcactgtctccaagc 2974441  T
Q  330 caattttccagtat 343  Q
    ||||||| ||||||    
T  2974440 caattttgcagtat 2974427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 346
Target Start/End: Complemental strand, 2927869 - 2927577
Alignment:
Q  54 agaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgt 153  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  154 gccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattg 253  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |  |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattg 2927670  T
Q  254 agaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttc 346  Q
    |||||||||  ||||| || ||| |||||| | |||||||||||||| |||||||||||||| |  |||||||| |  |||||||||||||||    
T  2927669 agaactgattgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtctccaagcatattttccagtatttc 2927577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 71 - 346
Target Start/End: Original strand, 3003174 - 3003445
Alignment:
Q  71 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 170  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||| ||||| |||| |||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  171 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 270  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||  |||||     
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaac 3003369  T
Q  271 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttc 346  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| | ||||||||| |  |||||||||||||||    
T  3003370 gtataatatctttgccaagaccattaaacaagttagccacagaatcactgtctccaagcatattttccagtatttc 3003445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 345
Target Start/End: Complemental strand, 2983605 - 2983284
Alignment:
Q  24 aatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagta 123  Q
    |||| ||||||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||    
T  2983605 aataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagta 2983506  T
Q  124 gtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagc 223  Q
    |||| | ||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||| ||||||||| ||| || |||||| |||||||||||    
T  2983505 gtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagc 2983406  T
Q  224 atttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtct 323  Q
    ||  || || ||| | ||| |   ||| ||| ||||||  ||||| | || || ||||||||||||||||||||||| | |||||| ||| |||  ||||    
T  2983405 atccaattcattggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaagaccattaaacaagatagccatagattgaccgtct 2983306  T
Q  324 ccaaaccaattttccagtattt 345  Q
    |||| | | ||||| |||||||    
T  2983305 ccaagcaagttttctagtattt 2983284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 71 - 315
Target Start/End: Complemental strand, 2952624 - 2952384
Alignment:
Q  71 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 170  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||  ||||| |||| |||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  171 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 270  Q
    ||||||||||| ||||| || |||||| ||| |||||||||  ||||||| |||||||  |||||||  | |||||||||||||||||||||||||||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaat 2952429  T
Q  271 gtataatatttttgcaaagaccattaaacatgttagccacagaat 315  Q
     || || ||||||||||| |||||||||| |||||||||||||||    
T  2952428 atacaacatttttgcaaataccattaaacctgttagccacagaat 2952384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 2965280 - 2964927
Alignment:
Q  15 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggc---------ttgtactacttgcaagactgaacaaactgattgaa 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||         |||||||||||||||||    |||||||| |||||    
T  2965280 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgcaaga----acaaactgtttgaa 2965185  T
Q  106 gtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacct------ 199  Q
     ||||||||||||||||||||| ||||| |||| |||||||||||  |||||||||||| |||| ||||||||| | ||||| | ||||||| |          
T  2965184 ttaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaacttcaacgt 2965085  T
Q  200 ----at--------gccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaa 287  Q
        ||        |||||||||||  |||||||||||| || |||||||| |||||||||||||||  |||||||||||||||||||| || |||| ||    
T  2965084 caacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttggaa 2964985  T
Q  288 agaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtattt 345  Q
    ||||||||||||| |||||||||||||| | | ||||||| |  ||||||||||||||    
T  2964984 agaccattaaacaagttagccacagaatcactatctccaagcatattttccagtattt 2964927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 2658311 - 2658645
Alignment:
Q  29 caataattatgaactaaacaatgaaagaaatcacttggaggc------ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagt 122  Q
    ||||||||||||||  ||||||||||||||||||| |||| |      |||||||||||| ||||| |||||||||| ||||| || |||||||| ||||    
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  123 agtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagc------------cttcaacctatgccaaggat 210  Q
    ||||| ||||| |||| ||||||| |||  | |||||||||| |||||||||||||||| |||||  |            ||| ||| || |||||||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggat 2658510  T
Q  211 tcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccac 310  Q
    || |||||||| | ||||||||||  || ||||||| ||| |||| |||| ||||| ||||  ||| |||||||||||||||| |||||| |||||||||    
T  2658511 tcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagccac 2658610  T
Q  311 agaatgattgtctccaaaccaattttccagtattt 345  Q
    ||||| | ||||||||| |||||||||||||||||    
T  2658611 agaatcactgtctccaagccaattttccagtattt 2658645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 2954829 - 2954726
Alignment:
Q  15 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 114  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2954829 gataatactaatagcaataat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtga 2954731  T
Q  115 gaaca 119  Q
     ||||    
T  2954730 taaca 2954726  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 345
Target Start/End: Complemental strand, 2979521 - 2979306
Alignment:
Q  129 attcccgcaacggaagcagcagtgtgccaagga--gtattgcaataatcacgcctgagagtagccttcaacct------atgccaaggattcttacaaaa 220  Q
    ||||| ||||||||||||||| | |||| ||||  |||||||||  |||| ||||||||| |||||||||  |      ||||||||||||  || ||||    
T  2979521 attccagcaacggaagcagcaatttgcctaggatcgtattgcaacgatcatgcctgagagaagccttcaagttcaactcatgccaaggattactataaaa 2979422  T
Q  221 agcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattg 320  Q
    | ||||||| |||||||| ||||||||||| |||||||||||||         ||| ||||| ||||||| |||||||||  |||||  |||||||| ||    
T  2979421 atcatttaaatctttgcaaagaatagagaaatgagaactgatat---------taacattttcgcaaagatcattaaacaatttagcagcagaatgactg 2979331  T
Q  321 tctccaaaccaattttccagtattt 345  Q
    ||||||| | |||||||||||||||    
T  2979330 tctccaagcaaattttccagtattt 2979306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 2954725 - 2954666
Alignment:
Q  179 cctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgca 238  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  2954725 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgca 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
Q  23 taatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt 74  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2986472 taataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 2952689 - 2952657
Alignment:
Q  30 aataattatgaactaaacaatgaaagaaatcac 62  Q
    |||||||||||||| ||||||||||||||||||    
T  2952689 aataattatgaactcaacaatgaaagaaatcac 2952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 34573 - 34905
Alignment:
Q  16 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgag 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34573 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgag 34672  T
Q  116 aacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctta 215  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||  ||    
T  34673 aacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattacta 34772  T
Q  216 caaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaat 315  Q
    ||||| |||||||||| |||||| ||||||||||| |||||||||||||||  |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  34773 caaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaat 34872  T
Q  316 gattgtctccaaaccaattttccagtatttctt 348  Q
     | ||||||||| | ||||   |||||||||||    
T  34873 cactgtctccaagcaaattagtcagtatttctt 34905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 44532 - 44591
Alignment:
Q  286 aaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtattt 345  Q
    ||||| |||||||||  ||||||||| ||||| ||||||||| | |||||||||||||||    
T  44532 aaagatcattaaacaaattagccacataatgactgtctccaagcaaattttccagtattt 44591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 3339775 - 3339442
Alignment:
Q  16 ataatactaatagcaataattatga---actaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 112  Q
    |||||||||| ||||||||||||||   ||| ||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3339775 ataatactaagagcaataattatgatgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagt 3339676  T
Q  113 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 212  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3339675 gagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattc 3339576  T
Q  213 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 312  Q
    ||||||||| |||||||||||||||  ||| ||| ||| |||||||| | | ||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  3339575 ttacaaaaatcatttaagtctttgccaagagtagggaaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccacag 3339476  T
Q  313 aatgattgtctccaaaccaattttccagtatttc 346  Q
    ||| | ||||| ||| ||||||||| ||||||||    
T  3339475 aatcactgtctgcaagccaattttctagtatttc 3339442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 71 - 345
Target Start/End: Complemental strand, 49614128 - 49613854
Alignment:
Q  71 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 170  Q
    |||||| |||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  171 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 270  Q
    |||||||| |||||||| |||||||| |||||||||||||  | ||||||| |||| |||||||  |||||||||||| | |||||||||| ||   |||    
T  49614028 taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaat 49613929  T
Q  271 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtattt 345  Q
    || ||| |||||| ||||||| |||||||| |||||||||||||| | | || |||| ||||||  |||||||||    
T  49613928 gtgtaacatttttccaaagactattaaacaagttagccacagaatcactatccccaagccaattcaccagtattt 49613854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 72 - 315
Target Start/End: Complemental strand, 49619102 - 49618860
Alignment:
Q  72 tgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaat 171  Q
    ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  172 aatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatg 271  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||| || | ||||||||    |||| | |||| |||||||||| |||   |||    
T  49619002 aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactgaaatttatatg 49618904  T
Q  272 tataatatttttgcaaagaccattaaacatgttagccacagaat 315  Q
    |  || |||||| |||||||||||| ||| ||| ||||||||||    
T  49618903 tgaaacatttttccaaagaccattatacaagtttgccacagaat 49618860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 49617758 - 49617650
Alignment:
Q  82 gcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcct 181  Q
    ||||||| ||| ||||||||||||||||||  |||| ||||||||||||||| ||||| |||||||| || |||||   | || ||||| ||||| ||||    
T  49617758 gcaagacagaataaactgattgaagtaaag--agaataagtagtaaaattccagcaacagaagcagctgt-tgcca---actagtgcaaaaatcatgcct 49617665  T
Q  182 gagagtagccttcaa 196  Q
    |||||||||||||||    
T  49617664 gagagtagccttcaa 49617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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