View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_12 (Length: 362)
Name: NF17255_low_12
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 40359300 - 40358969
Alignment:
| Q |
1 |
aaactccaacaactcctaccaatgaagttcttctgtgtcaccatcatcatatcgaacagtgtaccatccataatctttagcataatcaattacctttctt |
100 |
Q |
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| T |
40359300 |
aaactccaacaactcctgccaatgaagttctcctgtgtcaccatcatcgtatcgaacagtgtaccatccataatctttagcataatcaattacctttctt |
40359201 |
T |
|
| Q |
101 |
gaatcatcatttaattaaaaataatttaatatttattctttgacttcttttgactgataaaaatagtttaggagaacgctgaaggtcgtnnnnnnnnntc |
200 |
Q |
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| T |
40359200 |
gaatcatcatttaattaaaaataatttaatatttattctttgacttcttttgactgataaaaatagtttaggagaacgctgaaggtcgtaaaaaaaaatc |
40359101 |
T |
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| Q |
201 |
acgatatcgcagatatttgttgtagcctaaaacaaacattcacgacaccgtga--nnnnnnnnnnagccaggtttttaaaaagtgttgaaaaggtggtca |
298 |
Q |
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| T |
40359100 |
acgatatcgcagatatttgttgtagcctaaaactaacattcacgacaccgtgattttttttttttagccaggtttttaaaaagtgttgaaaaggtggtca |
40359001 |
T |
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| Q |
299 |
ccccacttctgtaaattgtggtaattctagaa |
330 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40359000 |
ccccacttctgtaaattgtggtaattctagaa |
40358969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 40363466 - 40363414
Alignment:
| Q |
5 |
tccaacaactcctaccaatgaagttcttctgtgtcaccatcatcatatcgaac |
57 |
Q |
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| T |
40363466 |
tccaacaactccttccaataaagttcgtctgtgtgaccatcttcatattgaac |
40363414 |
T |
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