View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17255_low_13 (Length: 356)

Name: NF17255_low_13
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17255_low_13
NF17255_low_13
[»] chr4 (3 HSPs)
chr4 (1-346)||(7653188-7653533)
chr4 (14-80)||(9109802-9109868)
chr4 (169-217)||(9109680-9109728)
[»] chr5 (1 HSPs)
chr5 (1-341)||(21902964-21903318)
[»] chr7 (1 HSPs)
chr7 (1-328)||(11362476-11362816)
[»] chr6 (2 HSPs)
chr6 (1-328)||(4059428-4059765)
chr6 (2-63)||(7863572-7863633)
[»] chr2 (1 HSPs)
chr2 (105-346)||(33172165-33172412)
[»] chr3 (2 HSPs)
chr3 (16-242)||(20592339-20592565)
chr3 (231-271)||(20592297-20592337)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7653533 - 7653188
Alignment:
Q  1 catcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       
T  7653533 catcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgt 7653434  T
Q  101 nnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatctt 200  Q
        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| ||||||||||||||||| |||||||    
T  7653433 tttgaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttctaggtaaatctt 7653334  T
Q  201 ctaatctctgtgtttttcaattgtttaattgtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7653333 ctaatctctgtgtttttcaattgtttaattgtttttgattttgaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaatttt 7653234  T
Q  301 aattgttataggtaaattgattttcgttttttattttgaatctgtg 346  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  7653233 aattgttataggtaaattgattttcgtttttgattttgaatctgtg 7653188  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9109868 - 9109802
Alignment:
Q  14 tgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgt 80  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  9109868 tgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt 9109802  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 9109728 - 9109680
Alignment:
Q  169 cgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttttt 217  Q
    |||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  9109728 cgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttttt 9109680  T

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Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 21903318 - 21902964
Alignment:
Q  1 catcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnn 100  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                       
T  21903318 catcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcat 21903219  T
Q  101 nnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatctt 200  Q
        |||||||||||||| |||||||||||| ||| |||||||||||||||  |||||  ||||||||| |||| ||||||||||||||||| |||||||    
T  21903218 tttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaatcgtaatttctaggtaaatctt 21903119  T
Q  201 ctaatctctgtgtttttcaattgtttaattgt--------------ttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgt 286  Q
    ||||||||||||||||||||||||||||||||              |||||||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  21903118 ctaatctctgtgtttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaagtttgtgt 21903019  T
Q  287 tgaatcgtaattgtaattgttataggtaaattgattttcgttttttattttgaat 341  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  21903018 tgaatcgtaattttaattattataggtaaattgattttcgtttttgattttgaat 21902964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 11362476 - 11362816
Alignment:
Q  1 catcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcctt-cttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnn 99  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                      
T  11362476 catcttcaacgtcggtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcgattttca 11362575  T
Q  100 nnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatct 199  Q
         |||||||||||| | |||||||||||||||| |||||||||||||||   ||||   |||||||||| || ||||||||||||||||| ||||||    
T  11362576 ttttgaaattgtttctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttctaggtaaatct 11362674  T
Q  200 tctaatctctgtgtttttcaattgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgt 286  Q
    |||||||||||||||||||||||||||||||||||             |||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  11362675 tctaatctctgtgtttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgt 11362774  T
Q  287 tgaatcgtaattgtaattgttataggtaaattgattttcgtt 328  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  11362775 tgaatggtaattttaattgttataggtaaattgattttcgtt 11362816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 4059428 - 4059765
Alignment:
Q  1 catcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatcctt-cttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnn 99  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||                      
T  4059428 catcttcaacgtcggtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcaattttca 4059527  T
Q  100 nnnnnaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatct 199  Q
         ||||||||||||   |||||||||||||||| |||||||||||||||   ||||    | || ||| ||| | ||||||||||||||| ||||||    
T  4059528 ttttgaaattgtttctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgtt----cctcttcgtcgcgacatcgtaatttctaggtaaatct 4059623  T
Q  200 tctaatctctgtgtttttcaattgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgt 286  Q
    |||||||||||||||||||||||||||||||||||             |||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  4059624 tctaatctctgtgtttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgt 4059723  T
Q  287 tgaatcgtaattgtaattgttataggtaaattgattttcgtt 328  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  4059724 tgaatggtaattttaattgttataggtaaattgattttcgtt 4059765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
Q  2 atcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaa 63  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7863633 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

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Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 105 - 346
Target Start/End: Original strand, 33172165 - 33172412
Alignment:
Q  105 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 204  Q
    |||||||||||||| ||||||||||||        ||||||||||||   ||||  |||||| ||||||| ||||||||||||||||| |||||||||||    
T  33172165 aaattgtttctcagcagctatcgcaca--------gtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaatttctaggtaaatcttctaa 33172256  T
Q  205 tctctgtgtttttcaattgtttaattgttt--------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaa 290  Q
    ||||||||||||||||||||||||||||||              |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||    
T  33172257 tctctgtgtttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaactttgtgtagaa 33172356  T
Q  291 tcgtaattgtaattgttataggtaaattgattttcgttttttattttgaatctgtg 346  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33172357 tcgtaattttaattgttataagtaaattgattttcgtttttgattttgaatctgtg 33172412  T

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Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 20592565 - 20592339
Alignment:
Q  16 tctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgtttct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||    
T  20592565 tctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattgtttct 20592466  T
Q  116 cagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttt 215  Q
    ||| |||||||||||| ||| |||||||||||||||  |||||  |||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  20592465 cagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttt 20592366  T
Q  216 ttcaattgtttaattgtttttgatttt 242  Q
    ||||||||||||||| ||||| |||||    
T  20592365 ttcaattgtttaattattttttatttt 20592339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 20592337 - 20592297
Alignment:
Q  231 gtttttgattttgaattgctctaggtaaactttaattgtaa 271  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  20592337 gtttttgattttgaattgttctaggtaaattttaatcgtaa 20592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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