View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_15 (Length: 350)
Name: NF17255_low_15
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 68 - 332
Target Start/End: Complemental strand, 26879880 - 26879597
Alignment:
| Q |
68 |
ttatgagcatttacctaaaagcttat---atttttatgttaattaatttattgatatgtgacaataatgt---------gatac------gtgaaaaaca |
149 |
Q |
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| T |
26879880 |
ttatgagcatttaactaaaagcttattatatttttatgttgattaatttgttgatatgtgacaataaagtattttataggataattgagtgtgaaaagca |
26879781 |
T |
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| Q |
150 |
tcaaacttacaaaagattatgctac-gagttgtaaaaaataagaaaactactacacctgaaggttgttgtaacgattgaaagttttgaggcaaactgggc |
248 |
Q |
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| T |
26879780 |
tcaaacttaccaaagattatgctattgagttgtaaaaaataagaaaactactacacctgaaggttgttgtaacgattgaaagttttgaggcaaactgggc |
26879681 |
T |
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| Q |
249 |
aagagaaatgactgaatccaatgagaatctgttcttgagttggtatccagtaattgttaggaacttgatttggtacactcacaa |
332 |
Q |
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| T |
26879680 |
aagagaaatgactgaatccaatgagaatctgttcttgagttggtatccagtaattgttaggaacttgatttggtacactcacaa |
26879597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 26879947 - 26879911
Alignment:
| Q |
31 |
tctcatgaaatgtgatgaaaaagagaatataaataat |
67 |
Q |
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| T |
26879947 |
tctcatgagatgtgatgaaaaagagaatataaataat |
26879911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39299998 - 39299865
Alignment:
| Q |
1 |
atcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaataatttatgagcatttacctaaaagcttatattttta |
100 |
Q |
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| T |
39299998 |
atcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaataatttatgagcatttacctaaaagcttatattttta |
39299899 |
T |
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| Q |
101 |
tgttaattaatttattgatatgtgacaataatgt |
134 |
Q |
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| T |
39299898 |
tgttaattaatttattgatatttgacaataatgt |
39299865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 198 - 321
Target Start/End: Complemental strand, 39299771 - 39299648
Alignment:
| Q |
198 |
actacacctgaaggttgttgtaacgattgaaagttttgaggcaaactgggcaagagaaatgactgaatccaatgagaatctgttcttgagttggtatcca |
297 |
Q |
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| T |
39299771 |
actacacctgaaggttgttgtaacgattgaaagttttgaggcagactgggcatgagaaatgactgaatccaatgagaatctgttcttgagttggtatcca |
39299672 |
T |
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| Q |
298 |
gtaattgttaggaacttgatttgg |
321 |
Q |
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| T |
39299671 |
gtaattgttaggaacatgatttgg |
39299648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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