View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_16 (Length: 337)
Name: NF17255_low_16
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 114 - 325
Target Start/End: Original strand, 4748226 - 4748437
Alignment:
| Q |
114 |
acaactaatgtactttggaaagattaaagaataaaacaaactatattaaataatgttaaatcaaataaagcgaaaagatagattgtcagtgtggtacaag |
213 |
Q |
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| T |
4748226 |
acaactaatgtactttggaaagattaaagaataaaacaaactatattaaataatgttaaatcaaataaaacgaaaagatagattgtcagtgtggtacaag |
4748325 |
T |
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| Q |
214 |
gaaagacaaatatggatggcacaaaaactggatgtgacagtacagaagttgtgtatttgggtgcaaagaagagagagatttggtgtaatgaaggtgcaag |
313 |
Q |
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| T |
4748326 |
gaaagacaaatatggatggcacaaaaactggatgtgacagtacagaagttgtgtatttgggtgcaaagaagagagagatttggtgcaatgaaggtgcaag |
4748425 |
T |
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| Q |
314 |
attcatacctga |
325 |
Q |
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| T |
4748426 |
actcatacctga |
4748437 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 40876018 - 40875982
Alignment:
| Q |
16 |
gctatatatataaagtttgaagctattgacaaaataa |
52 |
Q |
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| T |
40876018 |
gctatatatataaagtttgaagctattgacaaaataa |
40875982 |
T |
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