View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_18 (Length: 319)
Name: NF17255_low_18
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 33531398 - 33531696
Alignment:
| Q |
9 |
gcattaaaattttcaattctatnnnnnnncaataacacaaaaagaaacacaaccattaatataactaagtgattgagctcaagtaatagtgggttttatt |
108 |
Q |
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| T |
33531398 |
gcattaaaattttcaattctataaaaaaacaataacacaaaaacaaacacaaccattaatataactaagtgattgagcccaagtaatagtgggttttatt |
33531497 |
T |
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| Q |
109 |
taattacaaattgattgggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatctcccatccgaactccagattaccaggg |
208 |
Q |
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| T |
33531498 |
taattacaaattgattgggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatctcccatccgaactccagattaccaggg |
33531597 |
T |
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| Q |
209 |
tcacttcccctcttaattcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatatt |
307 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531598 |
tcacttcccctcttaattcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatatt |
33531696 |
T |
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