View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_20 (Length: 307)
Name: NF17255_low_20
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 36150871 - 36151144
Alignment:
| Q |
11 |
catcatcacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
110 |
Q |
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| T |
36150871 |
catcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
36150970 |
T |
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| Q |
111 |
aacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
210 |
Q |
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| T |
36150971 |
aacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
36151070 |
T |
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| Q |
211 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccgg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36151071 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccgg |
36151144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 36154263 - 36154532
Alignment:
| Q |
17 |
cacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacacc |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
36154263 |
cacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaacaacacc |
36154362 |
T |
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| Q |
117 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
216 |
Q |
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| T |
36154363 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
36154462 |
T |
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| Q |
217 |
cttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggag |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36154463 |
cttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggag |
36154532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 5273544 - 5273616
Alignment:
| Q |
185 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcaca |
257 |
Q |
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||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| |
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| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcaca |
5273616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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