View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_24 (Length: 256)
Name: NF17255_low_24
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 33531380 - 33531154
Alignment:
| Q |
13 |
aaaggcattgaactgcaataaagaaactccgtactttgattcggaacttgatttccaagctcaggctcttcaagttcactttaacaaatgcagtgaggcc |
112 |
Q |
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| T |
33531380 |
aaaggcattgaactgcaataaagaaactccgtactttgattcggaacttgatttccaagctcaggctcttcaagttcactttaacaaatgcagtgaggcc |
33531281 |
T |
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| Q |
113 |
aggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttggttaaatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531280 |
aggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttggttaaatgt |
33531181 |
T |
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| Q |
213 |
tttattttaggcactcctacatttttt |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33531180 |
tttattttaggcactcctacatttttt |
33531154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 26209227 - 26209083
Alignment:
| Q |
59 |
cttgatttccaagctcaggctcttcaagttcactttaacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctg |
158 |
Q |
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|||| ||| |||||||||||||| ||| |||| | || ||||||| || || |||||| |||| || |||| ||| || | |||||||||||||||| |
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| T |
26209227 |
cttgcttttcaagctcaggctctacaaaatcacctgaagaaatgcatagaagctaggaaattcaatgaatggagtgttgtactaaaggaaacacagtctg |
26209128 |
T |
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| Q |
159 |
caatatccttaggtgtggattcagctccaaaggttagtttctttg |
203 |
Q |
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|| |||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
26209127 |
cattatccttaggtgccgattcagctccacaggttagttcctttg |
26209083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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