View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_29 (Length: 242)
Name: NF17255_low_29
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_29 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 9819507 - 9819349
Alignment:
| Q |
5 |
ttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctc |
104 |
Q |
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| T |
9819507 |
ttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctc |
9819408 |
T |
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| Q |
105 |
aaagcactgaaaacacctatatggccttgcattgcttgatgttggagttatattacagt |
163 |
Q |
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| T |
9819407 |
aaagcactgaaaacacctaaatggccttgcattgcttgatgttggagttatattacagt |
9819349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 9854469 - 9854631
Alignment:
| Q |
1 |
acatttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtg |
100 |
Q |
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| T |
9854469 |
acatttggacaaaatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtg |
9854568 |
T |
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| Q |
101 |
tctcaaagcactgaaaacacctatatggccttgcattgcttgatgttggagttatattacagt |
163 |
Q |
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| T |
9854569 |
tctcaaagcactgaaaacacctatatggtcttgcattgcttgatgttggagttatattacagt |
9854631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 21035 - 21106
Alignment:
| Q |
39 |
agtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctcaaagca |
110 |
Q |
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| T |
21035 |
agtaaagataagtgtcagtttattgatcatactttttaagaatttcacaattctaccatatgtctcaaagca |
21106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 28220537 - 28220608
Alignment:
| Q |
39 |
agtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctcaaagca |
110 |
Q |
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| T |
28220537 |
agtaaagataagtgtcagtttattgatcatactttttaagaatttcacaattctaccatatgtctcaaagca |
28220608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 44870354 - 44870214
Alignment:
| Q |
5 |
ttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctc |
104 |
Q |
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| T |
44870354 |
ttggacaaaatcgtttggttttgctaggatgacgagtgaagacaagtgtaaacttattgataatactttcttagaatttcacaactctatcatgtgcctt |
44870255 |
T |
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| Q |
105 |
aaagcactgaaaacacctatatggccttgcattgcttgatg |
145 |
Q |
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| T |
44870254 |
aaaccactgaatatacctatatggcctcgcattgcttgatg |
44870214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 47524085 - 47524212
Alignment:
| Q |
18 |
tttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagtaccatgtgtctcaaagcactgaaaa |
117 |
Q |
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| T |
47524085 |
tttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacactatcatgtgccataaatccctgaata |
47524184 |
T |
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| Q |
118 |
cacctatatggccttgcattgcttgatg |
145 |
Q |
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|||| |||||||||| ||||||||||| |
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| T |
47524185 |
gacctgtatggccttgtattgcttgatg |
47524212 |
T |
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