View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_30 (Length: 241)
Name: NF17255_low_30
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 37335557 - 37335451
Alignment:
| Q |
136 |
ttgttgtttgataaatattttattgtattcctcccaacttagataagaaccattgaattcaagatcaattttttcctcaaata--tatagttaaaatatg |
233 |
Q |
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| T |
37335557 |
ttgttgtttgataaatattttattgtattcctcc-aacttagataagaaccgttgaattcaagatcaattttttcctcaaatatatatagttaaaatatg |
37335459 |
T |
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| Q |
234 |
acatgatt |
241 |
Q |
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|||||||| |
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| T |
37335458 |
acatgatt |
37335451 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 37335729 - 37335608
Alignment:
| Q |
12 |
aataaattcattagtagaaaattaatataataatacttgcatcagctcatttatgtggaaaaataataatcaaaggatttgatatttttaaacaaagaaa |
111 |
Q |
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| T |
37335729 |
aataatttcatcagaagaaaattaatataataacacttacacttgcttatttatgtggaaaaataataatcaaaggatttgat-tttttaaacaaagaaa |
37335631 |
T |
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| Q |
112 |
gtctttggagtgacctcagtcct |
134 |
Q |
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| T |
37335630 |
gtctttggggtgacctcagtcct |
37335608 |
T |
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