View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17255_low_31 (Length: 239)

Name: NF17255_low_31
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17255_low_31
NF17255_low_31
[»] chr5 (3 HSPs)
chr5 (1-222)||(38921529-38921749)
chr5 (30-222)||(35968502-35968683)
chr5 (161-205)||(16727903-16727947)
[»] chr7 (1 HSPs)
chr7 (1-222)||(41739696-41739916)
[»] chr1 (3 HSPs)
chr1 (1-222)||(35063397-35063609)
chr1 (161-222)||(26529582-26529643)
chr1 (169-222)||(36574036-36574089)
[»] chr4 (6 HSPs)
chr4 (1-222)||(30830001-30830220)
chr4 (21-222)||(52190144-52190356)
chr4 (1-94)||(31409575-31409667)
chr4 (161-205)||(31409401-31409445)
chr4 (99-147)||(8479843-8479891)
chr4 (169-205)||(52189277-52189313)
[»] chr8 (3 HSPs)
chr8 (21-156)||(17864490-17864624)
chr8 (161-195)||(32565560-32565594)
chr8 (162-195)||(17864642-17864675)
[»] chr3 (2 HSPs)
chr3 (1-142)||(19801947-19802069)
chr3 (161-195)||(36163484-36163518)
[»] chr2 (2 HSPs)
chr2 (161-222)||(4753602-4753663)
chr2 (169-222)||(31622039-31622092)
[»] chr6 (2 HSPs)
chr6 (161-222)||(30758798-30758859)
chr6 (162-222)||(18191820-18191880)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38921749 - 38921529
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaag 100  Q
    ||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  38921749 ttgaatatgatcacttctgggcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaag 38921651  T
Q  101 aagatgaaggcagaaacatgattgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgaccaacg 200  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  38921650 aagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacg 38921551  T
Q  201 aaacaataattgggggagtttt 222  Q
    ||||||| ||||||||||||||    
T  38921550 aaacaatcattgggggagtttt 38921529  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 35968502 - 35968683
Alignment:
Q  30 ttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaagaagatgaaggcagaaacatgattgcggtc 129  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||          |||||||| ||| ||||||||||||  |||    
T  35968502 ttggtgggcatgagttcatgagtagagttggagaagatgaa-ggaattcggggccttgaa----------gaagatgatggcggaaacatgattgttgtc 35968590  T
Q  130 attttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  35968591 attttggtccctcatctatgagtataacaaagttaacaccaagttaacgttttggatgcatttgactaacaaaacaataattgggggagtttt 35968683  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 16727947 - 16727903
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgaccaacgaaaca 205  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||||    
T  16727947 gttaacatcaagttaatgttttggatgcatttgactaacggaaca 16727903  T

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Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41739916 - 41739696
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaag 100  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||     
T  41739916 ttgaatatgatcacttctgggcataggtgctggtgagcatgagttcatgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaaa 41739818  T
Q  101 aagatgaaggcagaaacatgattgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgaccaacg 200  Q
    ||||||| ||||||||||||||||  ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41739817 aagatgatggcagaaacatgattgttgtcattttgatccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacg 41739718  T
Q  201 aaacaataattgggggagtttt 222  Q
    ||||||| ||||||||||||||    
T  41739717 aaacaatcattgggggagtttt 41739696  T

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Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35063397 - 35063609
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaag 100  Q
    ||||||| |||||||| | |||||||||||||||||||||||||        || ||||||||||||||| ||||||||||||||||||||||| |||||    
T  35063397 ttgaatatgatcatttatgggcataggtgttggtgagcatgagt--------agtgttggagaagatgaa-ggaattgggggcattgaagaagattgaag 35063487  T
Q  101 aagatgaaggcagaaacatgattgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgaccaacg 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35063488 aagatgaaggcagaaacatgattgttgtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacg 35063587  T
Q  201 aaacaataattgggggagtttt 222  Q
    ||||||||||||||||||||||    
T  35063588 aaacaataattgggggagtttt 35063609  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 26529643 - 26529582
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    ||||||| ||||||||||||||||||||||||||| |||  |||||  |||| |||||||||    
T  26529643 gttaacatcaagttaacgttttggatgcatttgactaacagaacaaacattgagggagtttt 26529582  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 36574089 - 36574036
Alignment:
Q  169 caagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    ||||||||||||||||||||||||||| |||| ||||   |||| |||||||||    
T  36574089 caagttaacgttttggatgcatttgactaacggaacagacattgagggagtttt 36574036  T

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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30830220 - 30830001
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaag 100  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||| ||||     
T  30830220 ttgaatatgatcacttctgggcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaa-ggaattgagggcattgaagaagattgaaa 30830122  T
Q  101 aagatgaaggcagaaacatgattgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgaccaacg 200  Q
    ||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  30830121 aagatgatggcagaaacatgattgtg-tcattttggtccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacg 30830023  T
Q  201 aaacaataattgggggagtttt 222  Q
    ||||||| ||||||||||||||    
T  30830022 aaacaatcattgggggagtttt 30830001  T

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Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 52190144 - 52190356
Alignment:
Q  21 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaagaagatgaaggcagaaacatg 120  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  52190144 gcataggtattggtgagcatgagttcatgagtagtgttggagaagatgaa-ggaattgagggcattgaagaagattgaagaagatgaaggcagaaacatg 52190242  T
Q  121 attgcggtcattttggtccctcgtctatgagtataacgg------------agttaacaccaagttaacgttttggatgcatttgaccaacgaaacaata 208  Q
    ||||  |||||||||||||||||||||||||||||||||            | |||||||||||||||||||||||||||||||||| ||| |||||       
T  52190243 attgttgtcattttggtccctcgtctatgagtataacggacacatcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagac 52190342  T
Q  209 attgggggagtttt 222  Q
    ||||||||||||||    
T  52190343 attgggggagtttt 52190356  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31409667 - 31409575
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaaga 94  Q
    |||||||  ||||||||| || | |||||||| |||||||||||| |||| ||| ||||||||||||| |||||||||| ||||||||||||||    
T  31409667 ttgaatatcatcatttctgggtagaggtgttgttgagcatgagtttatgaatagtgttggagaagatg-aaggaattggaggcattgaagaaga 31409575  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 31409445 - 31409401
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgaccaacgaaaca 205  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  31409445 gttaacaccaagttaacgttttggatgcatttgactaacggaaca 31409401  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 8479891 - 8479843
Alignment:
Q  99 agaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 147  Q
    ||||||||||||||| ||||| |||  | ||||||||||||||||||||    
T  8479891 agaagatgaaggcaggaacataattctgatcattttggtccctcgtcta 8479843  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 52189313 - 52189277
Alignment:
Q  169 caagttaacgttttggatgcatttgaccaacgaaaca 205  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  52189313 caagttaacgttttggatgcatttgactaacggaaca 52189277  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 17864490 - 17864624
Alignment:
Q  21 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaagaagatgaaggcagaaacatg 120  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |  |||||||||||| |||||||||||||||||||||||||    
T  17864490 gcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaa-ggaattgagaacattgaagaagattgaagaagatgaaggcagaaacatg 17864588  T
Q  121 attgcggtcattttggtccctcgtctatgagtataa 156  Q
    ||||| ||||||||||||||| ||||||||||||||    
T  17864589 attgctgtcattttggtccctagtctatgagtataa 17864624  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 32565560 - 32565594
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgac 195  Q
    ||||||| |||||||||||||||||||||||||||    
T  32565560 gttaacatcaagttaacgttttggatgcatttgac 32565594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 17864642 - 17864675
Alignment:
Q  162 ttaacaccaagttaacgttttggatgcatttgac 195  Q
    ||||||||||||||| ||||||||||||||||||    
T  17864642 ttaacaccaagttaatgttttggatgcatttgac 17864675  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19802069 - 19801947
Alignment:
Q  1 ttgaatacgatcatttctaggcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagactgaag 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||        |||||| | ||||||||||| ||||||||||||||||          |||||    
T  19802069 ttgaatatgataatttctaggcataggtgttggtgagcat--------gagtagtgatggagaagatg-aaggaattgggggcat----------tgaag 19801989  T
Q  101 aagatgaaggcagaaacatgattgcggtcattttggtccctc 142  Q
    ||| ||||||||||||||| |||| |||||||||||||||||    
T  19801988 aagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 36163518 - 36163484
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgac 195  Q
    |||||||||||||||||||||||||||||||||||    
T  36163518 gttaacaccaagttaacgttttggatgcatttgac 36163484  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 4753663 - 4753602
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||   |||| |||||||||    
T  4753663 gttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttt 4753602  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 31622039 - 31622092
Alignment:
Q  169 caagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    ||||||||||||||||||||||||||| |||| |||||  |||| |||||||||    
T  31622039 caagttaacgttttggatgcatttgacaaacggaacaaacattgagggagtttt 31622092  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 30758798 - 30758859
Alignment:
Q  161 gttaacaccaagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||   |||| |||||||||    
T  30758798 gttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttt 30758859  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 18191880 - 18191820
Alignment:
Q  162 ttaacaccaagttaacgttttggatgcatttgaccaacgaaacaataattgggggagtttt 222  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||   ||||||||||||||    
T  18191880 ttaataccaagttaacgttttggatgcatttgactaacataacatacattgggggagtttt 18191820  T

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