View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_34 (Length: 214)
Name: NF17255_low_34
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 7653562 - 7653699
Alignment:
| Q |
58 |
gatggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgggtttcgattgagaatggaggtaaagggagaacagttg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
7653562 |
gatggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgtgtttcgattgagaatggaggaaaagggagaacagttg |
7653661 |
T |
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| Q |
158 |
ggttttgattgggttcgattgagaaggattgggttttg |
195 |
Q |
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| T |
7653662 |
ggttttgattgggttcgattgagaaggattgggttttg |
7653699 |
T |
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 20592617 - 20592730
Alignment:
| Q |
48 |
agtgtttcatgatggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgggtttcgattgagaatggaggtaaaggg |
147 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20592617 |
agtgtttcacgatggtgtttcacggtggtttggggtctgagcttgggtttcacagtggtggtttggggattgggtttcgattgagaatggaggaaaaggg |
20592716 |
T |
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| Q |
148 |
agaacagttgggtt |
161 |
Q |
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| T |
20592717 |
agaacgattgggtt |
20592730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 11362436 - 11362343
Alignment:
| Q |
58 |
gatggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgggtttcgattgagaatggaggtaaagggagaac |
152 |
Q |
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| T |
11362436 |
gatggtgtttcacggtggtttggggtctgactttgggtttcacggtggtggttt-aggattgggttacgattgaaaatggaggaaaagggagaac |
11362343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 4059388 - 4059295
Alignment:
| Q |
58 |
gatggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgggtttcgattgagaatggaggtaaagggagaac |
152 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||| |
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| T |
4059388 |
gatggtgtttcacggtggtttggggtctgactttgggtttcacggtggtggttt-gggattgggttatgattgaaaatggaggaaaagggagaac |
4059295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 21905454 - 21905544
Alignment:
| Q |
61 |
ggtgtttcacggtggtttggggtctgagtttgggtttcacggtggtggtttggggattgggtttcgattgagaatggaggtaaagggagaac |
152 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||| | ||| ||||||| |
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| T |
21905454 |
ggtgtttcacggtggtttggggtctgaatttgggtttcacggtggtggttt-gggattgggttgcgattgaaaatggacgaaaaaggagaac |
21905544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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