View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17255_low_35 (Length: 212)
Name: NF17255_low_35
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_35 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 6604 - 6681
Alignment:
| Q |
114 |
tcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgacc |
191 |
Q |
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| T |
6604 |
tcagaagcatctgaaggaatgaggactctgaaggattcatacatctgaataccacgtcagcagctgaagactctgacc |
6681 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 35036565 - 35036483
Alignment:
| Q |
108 |
tttcgttcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgac |
190 |
Q |
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| T |
35036565 |
tttcgtttagaagcatctgaaggaatgaagactctaaagacattatgcatttgaagaccacatcagcatatgaagactctgac |
35036483 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 20648913 - 20648875
Alignment:
| Q |
151 |
caagcatctgaagaccacgtcagcagctgaagactctga |
189 |
Q |
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| T |
20648913 |
caagcatctgaagaccacgtcaacagctgaagactctga |
20648875 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 33013460 - 33013503
Alignment:
| Q |
153 |
agcatctgaagaccacgtcagcagctgaagactctgacctgttt |
196 |
Q |
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| T |
33013460 |
agcatctgaagaccatgttagcagctgaagactctgaccagttt |
33013503 |
T |
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