View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17255_low_4 (Length: 571)
Name: NF17255_low_4
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 108 - 555
Target Start/End: Complemental strand, 32002397 - 32001950
Alignment:
| Q |
108 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
207 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
32002298 |
T |
|
| Q |
208 |
gccatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32002297 |
accatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
32002198 |
T |
|
| Q |
308 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaatctaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32002197 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaaactaat |
32002098 |
T |
|
| Q |
408 |
ccttttgctagtggttccataagaatctatcttcgtgaagtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaagaagaggg |
507 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32002097 |
ccttttgctagtggttccataagaatctatcttcgtgaggtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaagaagaggg |
32001998 |
T |
|
| Q |
508 |
ttgcaattaaacataacggggatacctcaaatttacctatgcagtaaa |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32001997 |
ttgcaattaaacataacggggatacctcaaatttacctatgcagtaaa |
32001950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 105 - 501
Target Start/End: Original strand, 39556357 - 39556753
Alignment:
| Q |
105 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaatt |
204 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| || | ||||||||| || |||| || | || |||| |
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|
| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
|
| Q |
205 |
caagccatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctgg |
304 |
Q |
| |
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| | |||||| | ||||| || ||||| || ||||||||||||||||| ||||| || |||||||||||| |||||| ||||| | || ||||| | |
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| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagc |
39556556 |
T |
|
| Q |
305 |
accatgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaatct |
404 |
Q |
| |
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||| ||||| ||||| || | |||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| || ||| || || || |
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| T |
39556557 |
accttgtacatgtccacttagacaagcttggggaagtcttgatgctctaattgggaggttaagggctgcttatgaggaaaacggcggaactccagagact |
39556656 |
T |
|
| Q |
405 |
aatccttttgctagtggttccataagaatctatcttcgtgaagtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaaga |
501 |
Q |
| |
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|||||||| || || ||| | || | | |||||| | || || || || | ||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
39556657 |
aatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
39556753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 123 - 393
Target Start/End: Original strand, 4863030 - 4863300
Alignment:
| Q |
123 |
tcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaa-ttcaagccatgttcttgaa |
221 |
Q |
| |
|
|||||||||| | | || |||||||| |||||||||||||||||||| ||| ||||||||| | | || | || || ||||| |||||| ||||| |
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|
| T |
4863030 |
tcacaaaagaaacgtgactggaacacgtttggacaatacttaaggaaccaatcaccaccagtttctttgtctcagtgcaacttcaa-ccatgtgcttgag |
4863128 |
T |
|
| Q |
222 |
ttcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggaccatgtacttgtcctc |
321 |
Q |
| |
|
||||| | ||||| |||||||||||||| || || || ||||| || ||||| | |||||||||||| |||| || || | ||| ||||||||||| |
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|
| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtccgt |
4863228 |
T |
|
| Q |
322 |
taaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggat |
393 |
Q |
| |
|
| | |||||||||||| |||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |
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| T |
4863229 |
tgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggat |
4863300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 30941749 - 30942240
Alignment:
| Q |
8 |
tcatcaacacacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30941749 |
tcatcaacacacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgaca |
30941848 |
T |
|
| Q |
108 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||| ||| | || ||| | |
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|
| T |
30941849 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagca |
30941948 |
T |
|
| Q |
208 |
gccatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
307 |
Q |
| |
|
||||||| | || ||||| | ||||| || |||||||||||||| || || || ||||||||||| |||||| |||||| | |||||||||| ||| |
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|
| T |
30941949 |
accatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
30942048 |
T |
|
| Q |
308 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaatctaat |
407 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||| | ||||| ||||| |
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|
| T |
30942049 |
ttgtacttgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaat |
30942148 |
T |
|
| Q |
408 |
ccttttgctagtggttccataagaatctatcttcgtgaagtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaa |
499 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| | || | ||||| |||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
30942149 |
ccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaa |
30942240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 37975117 - 37975211
Alignment:
| Q |
297 |
ccacctggaccatgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtgg |
391 |
Q |
| |
|
||||| || |||||| |||||||| | |||||||||||||||||||||||||| || ||||| || ||| | ||||||| |||||| || ||||| |
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|
| T |
37975117 |
ccaccaggtccatgtccttgtcctttgaaacaagcttggggaagtcttgatgctcttattggtaggttacgtgctgcttttgaagagaacggtgg |
37975211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
117 |
tacgaatcacaaaagagaagagattggaacacttttggacaatac |
161 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 33672141 - 33672047
Alignment:
| Q |
297 |
ccacctggaccatgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtgg |
391 |
Q |
| |
|
||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
33672141 |
ccacctgcaccttgtccttgtcctctacgacaagcttggggaagtcttgatgcattgattggaagactaagagctgcttttgaagaaaatggtgg |
33672047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 15970189 - 15970245
Alignment:
| Q |
126 |
caaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccacca |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| || || ||||||||| |
|
|
| T |
15970189 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccacca |
15970245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 15970390 - 15970454
Alignment:
| Q |
327 |
caagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtgg |
391 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| ||| | |||||||||| |||||| |||||||| |
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|
| T |
15970390 |
caagcgtggggtagtcttgatgcacttattgggagacttagagctgcttttgaagagaatggtgg |
15970454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 33672312 - 33672256
Alignment:
| Q |
126 |
caaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccacca |
182 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||| |||| || || ||||||||| |
|
|
| T |
33672312 |
caaaaaagaagagactggaacacttttggtcaatacctaagaaaccatagaccacca |
33672256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 35814660 - 35814715
Alignment:
| Q |
297 |
ccacctggaccatgtacttgtcctctaaaacaagcttggggaagtcttgatgcact |
352 |
Q |
| |
|
||||||| ||| ||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
35814660 |
ccacctgcaccttgtgcttgtcctctcaagcaagcttggggaagtcttgatgcact |
35814715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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