View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17255_low_5 (Length: 526)
Name: NF17255_low_5
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 2620117 - 2620608
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2620117 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaa |
2620216 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620217 |
ggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
2620316 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtgttgattgcttttgccacaatgcgaatatacaaagtttattaatcagttctttctcatcaaaaggcttacctaaaaaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620317 |
ggatatgatactcaggttagtgttgattgcttttgccacaatgcgaatatacaaagtttatcgatcagttctttctcatcaaaaggcttacctaaaaaca |
2620416 |
T |
|
| Q |
314 |
aaatagtagtacgggttgtccagacgaaccatacaactgaatgtcggattgacaaaaaaccacatataatctttccccactaaaccagccctgaagacac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620417 |
aaatagtagtacgggttgtccagacgaaccatacaactgaatgtcggattgacaaaaaaccacatataatctttccccactaaaccagccctgaagacac |
2620516 |
T |
|
| Q |
414 |
ctcaaaaagacattatgcaacaacaattgttgttgcaatgttgatggaaaaacctctaaaatctttatgttgtggccacaacataattgcga |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2620517 |
ctcaaaaagacattatgcaacaacaattgttgttgcaatgttgatggaaaaacctctaaaatctttatgttgtggccacaatataattgcga |
2620608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 2572631 - 2572410
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2572631 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcattaa |
2572532 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572531 |
ggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
2572432 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtg |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2572431 |
ggatatgatactcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 2432842 - 2433081
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2432842 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaa |
2432941 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2432942 |
ggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttgccacaa |
2433041 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtgttgattgcttttgccaca |
253 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
2433042 |
ggatatgatactcaggttagtgttaattacttttgtcaca |
2433081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 2448709 - 2448930
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2448709 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaa |
2448808 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448809 |
ggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
2448908 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtg |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2448909 |
ggatatgatactcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 2677467 - 2677228
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2677467 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattat |
2677368 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
2677367 |
ggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaa |
2677268 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtgttgattgcttttgccaca |
253 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
2677267 |
ggatatgatactcaggttagtgttaattacttttgtcaca |
2677228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 2586427 - 2586661
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |
|
|
| T |
2586427 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcatcaa |
2586526 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
2586527 |
ggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaa |
2586626 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtgttgattgcttttg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586627 |
ggatatgatactcaggttagtgttgattgcttttg |
2586661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 2600209 - 2599989
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2600209 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaa |
2600110 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2600109 |
ggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttgccacaa |
2600010 |
T |
|
| Q |
214 |
ggatatgatactcaggttagt |
234 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
2600009 |
gtatatgatactcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 2645029 - 2644808
Alignment:
| Q |
14 |
ttcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaa |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2645029 |
ttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaa |
2644930 |
T |
|
| Q |
114 |
ggagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2644929 |
ggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttgccacaa |
2644830 |
T |
|
| Q |
214 |
ggatatgatactcaggttagtg |
235 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
2644829 |
ggatatgatacgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 17872804 - 17872589
Alignment:
| Q |
15 |
tcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaag |
114 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17872804 |
tcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaa |
17872705 |
T |
|
| Q |
115 |
gagaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaag |
214 |
Q |
| |
|
||||||||| ||||||| | ||| ||||||| | || || ||||| || ||||| ||| || ||||||||| |||||||||| ||| | || |||| |
|
|
| T |
17872704 |
gagaatataatttttggtaaagaagatgctaccgaagatgagattgttgaagctgcgaaaatttgtaatgctcatgatttcatttctttgcttcctcaag |
17872605 |
T |
|
| Q |
215 |
gatatgatactcaggt |
230 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
17872604 |
gttacaatactcaggt |
17872589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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