View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17255_low_6 (Length: 483)
Name: NF17255_low_6
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Original strand, 43255515 - 43255974
Alignment:
| Q |
10 |
agatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255515 |
agatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagg |
43255614 |
T |
|
| Q |
110 |
gagctgcaaaatgatatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255615 |
gagctgcaaaatgatatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagg |
43255714 |
T |
|
| Q |
210 |
gaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaatgatgatgaggaaacaaatgcagtccaaagctttcgtgatgaaaatggtgttccgcc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255715 |
gaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaatgatgacgaggaaacaaatgcagtccaaagctttcgtgatgaaaatggtgttccgcc |
43255814 |
T |
|
| Q |
310 |
tgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatatttatgaagtcgaatatggagaagataatgaagttgat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43255815 |
tgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatatttatgaagtcgcatatggagaagataatgaagttgat |
43255914 |
T |
|
| Q |
410 |
atgaatttggatgaattgatgaattctgcaacagtcgatgaagaaattaatgcaggaagt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255915 |
atgaatttggatgaattgatgaattctgcaacagtcgatgaagaaattaatgcaggaagt |
43255974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 275 - 455
Target Start/End: Original strand, 43257829 - 43258009
Alignment:
| Q |
275 |
gtccaaagctttcgtgatgaaaatggtgttccgcctgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatattt |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
43257829 |
gtccaaagctttcatgatgaaaatggtgttccgcctgacggtggtgaagaaaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtattt |
43257928 |
T |
|
| Q |
375 |
atgaagtcgaatatggagaagataatgaagttgatatgaatttggatgaattgatgaattctgcaacagtcgatgaagaaa |
455 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||| | || ||||||| | |||||| ||| ||||||| |
|
|
| T |
43257929 |
atgaagtcacgtatggagaagataatgatgttgaaatgaatttggaaggatcgatgaatgttacaacagccgaagaagaaa |
43258009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 43257658 - 43257752
Alignment:
| Q |
11 |
gatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
43257658 |
gatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagtacaact |
43257752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University