View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17255_low_7 (Length: 483)

Name: NF17255_low_7
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17255_low_7
NF17255_low_7
[»] chr6 (24 HSPs)
chr6 (184-467)||(2997488-2997771)
chr6 (151-467)||(2659091-2659410)
chr6 (167-426)||(2982559-2982818)
chr6 (166-427)||(2934285-2934546)
chr6 (185-427)||(2951647-2951889)
chr6 (166-427)||(2926846-2927107)
chr6 (166-427)||(3003906-3004173)
chr6 (185-472)||(2964193-2964492)
chr6 (1-133)||(2930037-2930170)
chr6 (195-427)||(2973728-2973960)
chr6 (27-153)||(2952701-2952831)
chr6 (1-153)||(2935328-2935482)
chr6 (27-153)||(3002964-3003094)
chr6 (27-153)||(2974752-2974880)
chr6 (3-111)||(2954809-2954921)
chr6 (1-101)||(2965258-2965364)
chr6 (1-101)||(2986474-2986575)
chr6 (1-64)||(2996663-2996725)
chr6 (28-101)||(2938197-2938271)
chr6 (72-152)||(2979775-2979855)
chr6 (29-101)||(2983619-2983698)
chr6 (122-153)||(2965366-2965397)
chr6 (124-153)||(2927956-2927985)
chr6 (124-153)||(2986579-2986608)
[»] scaffold0024 (3 HSPs)
scaffold0024 (167-441)||(35344-35618)
scaffold0024 (25-147)||(43551-43680)
scaffold0024 (94-137)||(34257-34300)
[»] chr7 (2 HSPs)
chr7 (176-402)||(3338877-3339091)
chr7 (1-96)||(3339754-3339850)
[»] chr3 (5 HSPs)
chr3 (164-281)||(49618079-49618196)
chr3 (359-427)||(49618292-49618361)
chr3 (25-107)||(49619171-49619255)
chr3 (359-427)||(49613312-49613380)
chr3 (41-101)||(49614205-49614267)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 9e-71; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 184 - 467
Target Start/End: Complemental strand, 2997771 - 2997488
Alignment:
Q  184 gctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctg 283  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  2997771 gctacgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgg 2997672  T
Q  284 ttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagatttattgttacttgaaaat 383  Q
    |||||| ||| ||| ||| | ||||  |   | ||||||| || ||||| ||| ||||||  ||| | |||||  |  | ||||| ||||||||||||||    
T  2997671 ttttataattgaacttttcttgagataccactatggtgggtttgtctttgaactttggttcgatgatggtataacaacaaatttaatgttacttgaaaat 2997572  T
Q  384 cagcttccatttttcgttattgaaaatatttacaatctttcattcagttttacaaatgctagtaatcctaacactaggatccct 467  Q
    || ||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  2997571 caacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatccct 2997488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 151 - 467
Target Start/End: Complemental strand, 2659410 - 2659091
Alignment:
Q  151 aacgaaccaacacaagtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatga 250  Q
    ||||||||||  || ||||| |||||||||||||| || || | |||| |||||||  ||||||| | |||||||| |||||| | ||||||||| || |    
T  2659410 aacgaaccaatgcatgtttagacaccttggtcagcaacataaaatctaacttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataa 2659311  T
Q  251 tgaacttgttaagttaatcttaatcgattcctgttttattattcaacatttttggagagtcacttgtggtg---ggattctctttaaaccttggttatat 347  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |  |  || || ||   || |||| ||||||||||||||| ||    
T  2659310 tgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatgatgatgggtttctatttaaaccttggttagat 2659211  T
Q  348 gttcgtatattattagatttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcattcagttttacaaatgctagta 447  Q
    | | |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||  |||| |||||||||||||     
T  2659210 gatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttacaaactttcatcgagttctacaaatgctagtg 2659111  T
Q  448 atcctaacactaggatccct 467  Q
     |||||| |||| |||||||    
T  2659110 ttcctaagactacgatccct 2659091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 167 - 426
Target Start/End: Original strand, 2982559 - 2982818
Alignment:
Q  167 tttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtta 266  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||||||||||    
T  2982559 tttaaacgacttggtctgctacgtagattctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagtta 2982658  T
Q  267 atcttaatcgattcctgttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagatt 366  Q
    |||||||||||||||  |||||| ||||||| ||||||||||     || |||||||  ||||||| ||||||||||| |   || ||||||||  |||     
T  2982659 atcttaatcgattccgcttttataattcaacttttttggagaaaatattatggtggggctctctttcaaccttggttaaaaagtcttatattatatgatg 2982758  T
Q  367 tattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcat 426  Q
    || |||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||    
T  2982759 tactgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtcgttcat 2982818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 166 - 427
Target Start/End: Original strand, 2934285 - 2934546
Alignment:
Q  166 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 265  Q
    ||||||||  ||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  2934285 gtttaaacgacttagtctgctacatagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagtt 2934384  T
Q  266 aatcttaatcgattcctgttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagat 365  Q
    ||| ||||| ||||||  |||||| ||||||| ||||||||||| |  || ||  |||  |||||||||||||| |||| ||  | |||||  |   |||    
T  2934385 aattttaatagattccgcttttataattcaacttttttggagagactattatgaagggcgtctctttaaacctttgttagatactggtataacagacgat 2934484  T
Q  366 ttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
    ||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2934485 ttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcatt 2934546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 427
Target Start/End: Original strand, 2951647 - 2951889
Alignment:
Q  185 ctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgt 284  Q
    |||| |||| ||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  |    
T  2951647 ctacatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgct 2951746  T
Q  285 tttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagatttattgttacttgaaaatc 384  Q
    ||||| ||||||| |||||||| |  |  || ||  |||   ||||||||||||||||||  |  | ||||| ||   ||||||| ||||||||||||||    
T  2951747 tttataattcaacttttttggacatcctgttatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatc 2951846  T
Q  385 agcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||    
T  2951847 agcttccctttttcgttattgaaaaaatttacagtctttcatt 2951889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 166 - 427
Target Start/End: Original strand, 2926846 - 2927107
Alignment:
Q  166 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 265  Q
    ||||||||  ||| ||| ||||| |||| ||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||    
T  2926846 gtttaaacgacttagtcggctacatagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagtt 2926945  T
Q  266 aatcttaatcgattcctgttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagat 365  Q
    |||||||||| |||||  |||||| ||||||| |||||||| |  |  ||  |  |||  ||||||||||||||||||| ||  | |||||  |   |||    
T  2926946 aatcttaatcaattccgcttttataattcaacttttttggacatcctattacgaagggtgtctctttaaaccttggttagataatggtataagacacgat 2927045  T
Q  366 ttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2927046 ttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcatt 2927107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 166 - 427
Target Start/End: Complemental strand, 3004173 - 3003906
Alignment:
Q  166 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 265  Q
    ||||||||  ||| ||| ||||| |||| ||| ||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||    
T  3004173 gtttaaacgacttagtctgctacatagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagtt 3004074  T
Q  266 aatcttaatcgattcctgttttattattcaacatttttggagagtcacttgtg---gtggg---attctctttaaaccttggttatatgttcgtatatta 359  Q
    ||||||||||||||||  |||||| ||||||| ||||||||||  |  || ||   || ||   ||||||||||||||||||||| ||  | |||||  |    
T  3004073 aatcttaatcgattccgcttttataattcaacttttttggagatactattatgatcgtcggtgcattctctttaaaccttggttagataatggtataaga 3003974  T
Q  360 ttagatttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
       ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  3003973 aacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcatt 3003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 472
Target Start/End: Original strand, 2964193 - 2964492
Alignment:
Q  185 ctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgt 284  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||  | ||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  2964193 ctacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggt 2964292  T
Q  285 tttattattcaacatttttggagagtcacttgtggtg---gg---------attctctttaaaccttggttatatgttcgtatattattagatttattgt 372  Q
    ||||| ||| ||| |||||| |||  |  || || ||   ||         ||||||| || |||||||||||||||| |||||  || ||||||| |||    
T  2964293 tttataattgaacttttttgcagatcctattatgatgttcggtgcattaatattctctctataccttggttatatgttggtataagatcagatttaatgt 2964392  T
Q  373 tacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcattcagttttacaaatgctagtaatcctaacactaggatccctccttt 472  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||| |||| |||||||||||||  |||||||||||  |||||| ||||    
T  2964393 tacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttcctaacactaacatcccttcttt 2964492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2930037 - 2930170
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttgtg--ttgtattagatcgaaattgtaatttcatataa 98  Q
    ||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  2930037 taattattgttattcttattatca-ccaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgtaatttcatataa 2930135  T
Q  99 ataggtgttctgctaaacaaacgagcaacttgatc 133  Q
    |||||||||||||||||||||||||||||||||||    
T  2930136 ataggtgttctgctaaacaaacgagcaacttgatc 2930170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 195 - 427
Target Start/End: Original strand, 2973728 - 2973960
Alignment:
Q  195 tctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgttttattattc 294  Q
    ||||||||||||||||||||| ||||||||||  ||||| |  |||||||||||  |||||||||||||||||| ||||| |||||| ||||||| |||     
T  2973728 tctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattg 2973827  T
Q  295 aacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagatttattgttacttgaaaatcagcttccatt 394  Q
    ||||||| | ||||  |  |||||  ||   |||||| |||||||||||||||  |  ||||| || |||||||||||||||||||||||||||||| ||    
T  2973828 aacatttattgagatcctgttgtgaaggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttccctt 2973927  T
Q  395 tttcgttattgaaaatatttacaatctttcatt 427  Q
    ||||||||||||||| ||||||| | |||||||    
T  2973928 tttcgttattgaaaaaatttacagtatttcatt 2973960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 2952701 - 2952831
Alignment:
Q  27 caatgtacgttgtttgtttcaatggtttcatta----ttttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacga 122  Q
    |||||||||||||||||||||||||||||||||     ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||  |    
T  2952701 caatgtacgttgtttgtttcaatggtttcattaatctctttgtgttgcattagattgaaattgtaatttcatataaatgggtgttctgctaaataaaaaa 2952800  T
Q  123 gcaacttgatcatgttgtattgttgttgaac 153  Q
    |||||||||||||||||||||||||||||||    
T  2952801 gcaacttgatcatgttgtattgttgttgaac 2952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2935328 - 2935482
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta---ttttgtgttgtattagatcgaaattgtaatttcatata 97  Q
    |||||||| |||||||||||||    |||||||||||||||||||||||||||||||||   |||||||||| ||||||| |||||||||||||||||||    
T  2935328 taattatttctattagtattat-tttcaatgtacgttgtttgtttcaatggtttcattatctttttgtgttgcattagattgaaattgtaatttcatata 2935426  T
Q  98 aataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 153  Q
    ||| ||||||||| |||| |||  ||||  ||||||||||||||||||||||||||    
T  2935427 aatgggtgttctgttaaataaaaaagcatattgatcatgttgtattgttgttgaac 2935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 3003094 - 3002964
Alignment:
Q  27 caatgtacgttgtttgtttcaatg-gtttcattat---tttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacga 122  Q
    |||||||||| ||||||||||||  ||||||||||   ||||||||| || |||| |||||||||||||||||||||||||||||||||| || ||| ||    
T  3003094 caatgtacgtagtttgtttcaatatgtttcattatctttttgtgttgcatcagattgaaattgtaatttcatataaataggtgttctgctgaataaaaga 3002995  T
Q  123 gcaacttgatcatgttgtattgttgttgaac 153  Q
    |||||||||||||||||||||||||||||||    
T  3002994 gcaacttgatcatgttgtattgttgttgaac 3002964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 2974752 - 2974880
Alignment:
Q  27 caatgtacgttgtttgtttcaatggtttcattat---tttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgag 123  Q
    |||||||||||||||||||||||| |||||||||   ||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||| | |  ||    
T  2974752 caatgtacgttgtttgtttcaatg-tttcattatctttttgtgttgcattagattgaaattataatttcatataaataggagttctgctaaatagaaaag 2974850  T
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2974851 caacttgatcatgttgtattgttgttgaac 2974880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 2954809 - 2954921
Alignment:
Q  3 attattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttgtgt----tgta-ttagatcgaaattgtaatttcatata 97  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||    |||| ||||||||| ||||||||||||||||    
T  2954809 attattgctattagtattatca-ccaatgtaacttgtttgtttctatggtttcattattttgtgtgttgtgtacttagatcgatattgtaatttcatata 2954907  T
Q  98 aataggtgttctgc 111  Q
    ||||||| ||||||    
T  2954908 aataggtcttctgc 2954921  T

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Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2965258 - 2965364
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta----ttttgtgttgt---attagatcgaaattgtaatttca 93  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    || ||||||||    |||||| |||||||||||||||    
T  2965258 taattattgctattagtattatca-ccaatgtacgttgtttgtttcaatggtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttca 2965356  T
Q  94 tataaata 101  Q
    ||||||||    
T  2965357 tataaata 2965364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2986474 - 2986575
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta--ttttgtgttgtattagatcgaaattgtaatttcatataa 98  Q
    ||||||||  ||||| |||||||| |||| |||| ||||||||||||||||||||||||  || |||||| | |||||||||||||||||||||||||||    
T  2986474 taattattattattattattatca-ccaacgtacattgtttgtttcaatggtttcattagtttgtgtgttttgttagatcgaaattgtaatttcatataa 2986572  T
Q  99 ata 101  Q
    |||    
T  2986573 ata 2986575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2996725 - 2996663
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttg 64  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  2996725 taattattgctattagtattatca-ccaatgtaagttgtttgtttcaatggtttcattattttg 2996663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 2938197 - 2938271
Alignment:
Q  28 aatgtacgttgtttgtttcaatggtttcattattttgtgt--tgtattagatcgaaattgtaatttcatataaata 101  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||| |||||||| |||||||||    
T  2938197 aatgtacgttgtttgtttcaatg-tttcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaata 2938271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 2979775 - 2979855
Alignment:
Q  72 ttagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaa 152  Q
    |||||| |||||||||| ||||||||||| |||||||||| ||| |||  |||||||| ||||||||| ||||||||||||    
T  2979775 ttagattgaaattgtaagttcatataaattggtgttctgccaaataaaaaagcaactttatcatgttgcattgttgttgaa 2979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 2983619 - 2983698
Alignment:
Q  29 atgtacgttgtttgtttcaatggtttcattattt----tgtgttgt---attagatcgaaattgtaatttcatataaata 101  Q
    |||||||||||||||||||||||||||||||| |    ||||||||    |||||| |||||||||||||||||||||||    
T  2983619 atgtacgttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 2983698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 2965366 - 2965397
Alignment:
Q  122 agcaacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||||    
T  2965366 agcaacttgatcatgttgtattgttgttgaac 2965397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 2927956 - 2927985
Alignment:
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2927956 caacttgatcatgttgtattgttgttgaac 2927985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 2986579 - 2986608
Alignment:
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2986579 caacttgatcatgttgtattgttgttgaac 2986608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 167 - 441
Target Start/End: Complemental strand, 35618 - 35344
Alignment:
Q  167 tttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaa---cttgttaag 263  Q
    ||||| || |||| ||||| || || ||||||||||||||||||||||| | |||||||| |||||| |  ||||| |||| ||||||   |||||||||    
T  35618 tttaagcatcttgatcagcgacatatattctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaag 35519  T
Q  264 ttaatcttaatcgattcctgttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattag 363  Q
    |||||||||||||||||| ||||||| ||||||| |||||||| |   | ||   |   |||| || |  ||||||||||| ||| | |||||  || ||    
T  35518 ttaatcttaatcgattccggttttataattcaacttttttggaaa--tattttaagaaagatt-tcctagaaccttggttagatgctggtataagatcag 35422  T
Q  364 atttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcattcagttttacaaatg 441  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||  |||||| |  |||| ||||||||    
T  35421 atttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttcgtggagttctacaaatg 35344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 43680 - 43551
Alignment:
Q  25 accaatgtacgttgtttgtttcaatggtttcattattttgtgt----tgta-ttagatcgaaattgtaatttcatataa--ataggtgttctgctaaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||| |||||| ||||||||||||||||||||  |||||| |||||| |||||    
T  43680 accaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaatataggtcttctgccaaaca 43581  T
Q  118 aacgagcaacttgatcatgttgtattgttg 147  Q
    ||  ||||||||| |||  || ||||||||    
T  43580 aaaaagcaacttggtcagattttattgttg 43551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 34300 - 34257
Alignment:
Q  94 tataaataggtgttctgctaaacaaacgagcaacttgatcatgt 137  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  34300 tataaataggtgttctgctaaataaaagagcaacttgatcatgt 34257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 402
Target Start/End: Original strand, 3338877 - 3339091
Alignment:
Q  176 cttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatc 275  Q
    |||||||  ||||||||| ||||||||| ||||||||||||| |||||||| |||  | |  |||||||| ||||| |||||||||||||||||||||||    
T  3338877 cttggtcttctacgtagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatc 3338976  T
Q  276 gattcctgttttattattcaacatttttggagagtcacttgtggtgggattctctttaaaccttggttatatgttcgtatattattagatttattgttac 375  Q
    |||||| ||||||| ||||||| |||            |||||||  |  ||||||||||||||||||    | | |||||| || ||||||||||||||    
T  3338977 gattccggttttataattcaactttt------------ttgtggtatgtctctctttaaaccttggttggtaggtggtatatcatcagatttattgttac 3339064  T
Q  376 ttgaaaatcagcttccatttttcgtta 402  Q
    |||||||||||||||| ||||||||||    
T  3339065 ttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3339754 - 3339850
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattat---tttgtgttgtattagatcgaaattgtaatttcatat 96  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||| ||| |||||||||   ||||||||| ||||||||||||||||||||| ||||    
T  3339754 taattattgctcttagtattattatc-aatgtacgttgtttgtttccatg-tttcattatctttttgtgttgcattagatcgaaattgtaattttatat 3339850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 49618079 - 49618196
Alignment:
Q  164 aagtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaag 263  Q
    |||||| ||||| ||| || ||||| ||||||| ||||||||| ||||||| | || ||||||  ||||| | | |||| ||||||||||| ||||||||    
T  49618079 aagtttgaacacgttgttctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaag 49618178  T
Q  264 ttaatcttaatcgattcc 281  Q
    ||||||||||| ||||||    
T  49618179 ttaatcttaattgattcc 49618196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 49618292 - 49618361
Alignment:
Q  359 attagatttattgtt-acttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
    ||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||| |||||||||    
T  49618292 attagatttattgtttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttcatt 49618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 49619171 - 49619255
Alignment:
Q  25 accaatgtacgttgtttgtttcaatggtttcattat--tttgtgttgtattagatcgaaattgtaatttcatataaataggtgtt 107  Q
    |||||| ||||||||||||| |||||||||||||||  | | ||||||||||||| |||||| |||| | |||||||||||||||    
T  49619171 accaatttacgttgtttgttccaatggtttcattatcatgtttgttgtattagattgaaattctaatattatataaataggtgtt 49619255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 49613312 - 49613380
Alignment:
Q  359 attagatttattgttacttgaaaatcagcttccatttttcgttattgaaaatatttacaatctttcatt 427  Q
    ||||||||| |||||||||||||||||  | |||||||| |||||| || | |||||||||||||||||    
T  49613312 attagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatt 49613380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 49614205 - 49614267
Alignment:
Q  41 tgtttcaatggtttcattattttg--tgttgtattagatcgaaattgtaatttcatataaata 101  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||||| || ||||||||||||    
T  49614205 tgtttcaatggtttcattattttgcatgttgtactagattgaaattgcaacttcatataaata 49614267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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