View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_high_10 (Length: 322)
Name: NF17256_high_10
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_high_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 42741787 - 42741467
Alignment:
| Q |
1 |
ttttgaaacaatgttgctagcatgtggaagtaatgaagttaa-ggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcgaacaaatgagc |
99 |
Q |
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| T |
42741787 |
ttttgaaacaatgttgctagcatgtggaagtaatgaagttaaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcgaacaaatgagc |
42741688 |
T |
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| Q |
100 |
atatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaagnnnnnnnngtatgtaatat |
199 |
Q |
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| T |
42741687 |
atatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcatgaaag--aaaaaagtatgtaatat |
42741590 |
T |
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| Q |
200 |
cttaatccaaatgcctttactaccttcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacgaggactggtcgaggaggt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741589 |
cttaatccaaatgcctttactaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacgaggactggtcgaggaggt |
42741490 |
T |
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| Q |
300 |
gaattcacttctaaatagtttca |
322 |
Q |
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| T |
42741489 |
gaattcacttctaaatagtttca |
42741467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 21745906 - 21745587
Alignment:
| Q |
1 |
ttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcgaacaaatgagca |
100 |
Q |
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| T |
21745906 |
ttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcgaacaaatgagca |
21745807 |
T |
|
| Q |
101 |
tatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaagnnnnnnnngtatgtaatatc |
200 |
Q |
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| T |
21745806 |
tatatattcttggatcttgatgaatcagtaagtgac----aatgtctcatttggtggtgatgtaaaaattctcatgaaag--aaaaaagtatgtaatatc |
21745713 |
T |
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| Q |
201 |
ttaatccaaatgcctttac----taccttcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacgaggactggtcgagga |
296 |
Q |
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| T |
21745712 |
ttaatccaaatgcctttactatttaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacgaggactggtcgagga |
21745613 |
T |
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| Q |
297 |
ggtgaattcacttctaaatagtttca |
322 |
Q |
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| T |
21745612 |
ggtgaattcacttctaaatagtttca |
21745587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 4890721 - 4890685
Alignment:
| Q |
2 |
tttgaaacaatgttgctagcatgtggaagtaatgaag |
38 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
4890721 |
tttgaaacaatgctgctagcacgtggaagtaatgaag |
4890685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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