View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_high_11 (Length: 289)
Name: NF17256_high_11
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 15528777 - 15528504
Alignment:
| Q |
1 |
taaaagtaatttacaattactgtacttttaaatctataaaagtgaatgattaaaagaaaaaataggaaccactctataggtagttgacttgacttcgaca |
100 |
Q |
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| T |
15528777 |
taaaagtaatttacaaatactgtacttttaaatctatgaaagtgaatgattaaaagaaaaaataggaaccactctataggtagttgacttgacttcgaca |
15528678 |
T |
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| Q |
101 |
attcacttagagaagacttaagaaattggccagaaagagtgtattgggacttctatttgagtccatacgtgatttttaactgaggcatgactttacacta |
200 |
Q |
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| T |
15528677 |
attcacttagagaagacttaagaaattggccagaaagagtgtattggaacttctatttgagtccatacgtgatttttaactgaggcatgactttacacta |
15528578 |
T |
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| Q |
201 |
attgtccatttcatggaacccaaagtttacattgcagagtccatcacaagttaaccaattacataattcaaatc |
274 |
Q |
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| T |
15528577 |
attgtccatttcatggaacccaaagtttacattgtagagtccatcacaagttaaccaattacataattcaaatc |
15528504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 22769717 - 22769652
Alignment:
| Q |
80 |
gtagttgacttgacttcgacaattcacttagagaagacttaagaaattggccagaaagagtgtattg |
146 |
Q |
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| T |
22769717 |
gtagttgacttgacttggaaaattcacttaaa-aagacttgagaaattggccacaaagagtgtattg |
22769652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 22769628 - 22769567
Alignment:
| Q |
188 |
tgactttacactaattgtccatttcatggaacccaaagtttacattgcagagtccatcacaa |
249 |
Q |
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| T |
22769628 |
tgactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
22769567 |
T |
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