View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17256_high_13 (Length: 250)
Name: NF17256_high_13
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47107805 - 47107575
Alignment:
| Q |
1 |
caaggatatgatcctaaacattcaacaaaaaatttctgaattagattccacatcattcagctgaaaataagcactaatttttgtgatgatgtgctttatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
47107805 |
caagggtatgatcctaaacattcaacaaaaaatttctgaattagattccacatcattcagctgaaaattagcactgatttttgtgatgatgtgctttatt |
47107706 |
T |
|
| Q |
101 |
gaacttaagt-ttttgtaatttgccttcttaacataatcttcattttgtttattagaaacacatcttttacgttgctgtatatttgtttgcaattttaaa |
199 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47107705 |
gaacttaagttttttgtaatttg---tcttaacataatcttcattttgtttattagaaacacatcttttacgttgctgtctatttgtttgcaattttaaa |
47107609 |
T |
|
| Q |
200 |
ttcattcatttgagaaaaatgccaagttgtttcc |
233 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |
|
|
| T |
47107608 |
ttcattcatttgagaaaaatcccaaattgtttcc |
47107575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University