View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_high_3 (Length: 553)
Name: NF17256_high_3
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Complemental strand, 41486312 - 41485808
Alignment:
| Q |
12 |
atgaaaaagaaggaaaacagaagacgtcagctgaatgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgata |
111 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486312 |
atgaaaaagaaggaaaacagaagacgccagctgaatgatggaatcttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgata |
41486213 |
T |
|
| Q |
112 |
gataaactgcggtgaagttggaaagaaaagggttcatgaagataacattgtgtgtttacagatgttagcttgtttagagtgccgacaatgacaacaaagt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41486212 |
gataaactgcggtgaagttggaaagaaaagggttcatgaagataacattgtgtgtttaccgatgttagcttgtttagagtgccgacaatgacaacaaagt |
41486113 |
T |
|
| Q |
212 |
atgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcctcatgctctcgtgttgattcctagcaacactcatgctcttcta |
310 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41486112 |
atgattctaataatatctcaggttcttctatattttttgtattactctcagaactcctcatgctctcgt--------------------atgctcttcta |
41486033 |
T |
|
| Q |
311 |
aatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataa |
410 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41486032 |
aatcctccaaaaatctggtggtggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccacagactgatctccataa |
41485933 |
T |
|
| Q |
411 |
aatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctctaacctgactca |
510 |
Q |
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| T |
41485932 |
aatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctctaacctgactca |
41485833 |
T |
|
| Q |
511 |
tccaaaatattaacttggctaatat |
535 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
41485832 |
tccaaaatattaacttggctaatat |
41485808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 46 - 396
Target Start/End: Complemental strand, 41483171 - 41482811
Alignment:
| Q |
46 |
atgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggtt |
145 |
Q |
| |
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||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
41483171 |
atgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggtt |
41483072 |
T |
|
| Q |
146 |
catgaagataacattgtgtgtttacagatgttagcttgtttagagtgccga-------caatgacaacaaagtatgattctaataa-atctcaggttctt |
237 |
Q |
| |
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||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||||| |
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| T |
41483071 |
catatagataacattgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttctt |
41482972 |
T |
|
| Q |
238 |
ctatattttttgtattactctcagaactcctcatgctctcgtgttgattcctagcaacactcatgctcttctaaatcctccaaaaatctggtggaggtga |
337 |
Q |
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||||||||| ||| ||||| ||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| | ||| | |||| ||||| | ||| |
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| T |
41482971 |
ctatattttctgttttactttcagatctcctcatgatctcgtgttgattcctagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatga |
41482872 |
T |
|
| Q |
338 |
aactggagagactggagaagtgatggatgcactattaactgatc--catatccaaccatag |
396 |
Q |
| |
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||| ||||||||||||||| || |||||||| || |||||||| |||||||||||||| |
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| T |
41482871 |
aacgagagagactggagaagagaaggatgcaccatcaactgatctatatatccaaccatag |
41482811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 535
Target Start/End: Complemental strand, 41482809 - 41482707
Alignment:
| Q |
433 |
tcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctctaacctgactcatccaaaatattaacttggctaa |
532 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||||| |||||| |||||||| ||||||| || || || ||| |||||||||| ||||| |
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| T |
41482809 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtctctaatctaacacacccacaatattaactcagctaa |
41482710 |
T |
|
| Q |
533 |
tat |
535 |
Q |
| |
|
||| |
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|
| T |
41482709 |
tat |
41482707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 73 - 507
Target Start/End: Original strand, 45384644 - 45385088
Alignment:
| Q |
73 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcat-gaagataacatt--gtgtgttta |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||| |
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| T |
45384644 |
tattcttttaactgaaacaagaaaatggaaacggtgatagataaactgcggtgaagttggaaagaaaagggttaatataagataacagtgcgggtgttta |
45384743 |
T |
|
| Q |
170 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcct |
268 |
Q |
| |
|
| ||||| | |||||||||||||| | |||||||||||||||||| |||||| || |||||| ||||||||||||||| ||||||| ||||||||||| |
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| T |
45384744 |
ccgatgtcaacttgtttagagtgctgtcaatgacaacaaagtatgcttctaacaacatctcaagttcttctatattttcattattactttcagaactcct |
45384843 |
T |
|
| Q |
269 |
catgctctcgtgttgattcctagcaacactcatgctcttctaaatcctcc------aaaaatctggtggaggtgaaactggagagactggagaagtgatg |
362 |
Q |
| |
|
||||||||||||| || ||||||||| |||| |||||||| || ||||| | | || ||||| | |||||| |||||||||||| || |||| |
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| T |
45384844 |
catgctctcgtgtcgactcctagcaatgctcaagctcttctcaagcctccgagagtgagagtcgggtggtgatgaaacaggagagactggaagagagatg |
45384943 |
T |
|
| Q |
363 |
gatgcactattaactgatccatatccaaccatagactgatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatat |
462 |
Q |
| |
|
||||||| || ||| | || |||||||||||||||||||||||||||||||| ||||| | | | | |||||||||| || ||||||||||||| |||| |
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|
| T |
45384944 |
gatgcaccatcaaccggtctatatccaaccatagactgatctccataaaatgacaattccattcgtcttttcttctcggtaaggtacatttcagccatat |
45385043 |
T |
|
| Q |
463 |
caccatcgtcatccataagctgctctatttcatctctaacctgac |
507 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
45385044 |
caccatcatcatccataagctgctctatttcgtctctaacctgac |
45385088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 331
Target Start/End: Original strand, 5671481 - 5671742
Alignment:
| Q |
73 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataacattgtgtgt---tta |
169 |
Q |
| |
|
||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||| ||| |
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|
| T |
5671481 |
tattcttttaactgaaacatgaaaggaaaaacgatgatagataaactgcggtgaagttggaaagaaaagtgttaatgtagataggaatgtgtgtgtgtta |
5671580 |
T |
|
| Q |
170 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcct |
268 |
Q |
| |
|
| |||| |||||| ||| | || | ||||||||||||||||| ||||| || |||||| |||||| ||||| || | ||||||| ||||||||| | |
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| T |
5671581 |
ctgatgccagcttggttaaaatgatgttaatgacaacaaagtatg-ctctaacaacatctcaagttcttatatatgttctatattactttcagaactcat |
5671679 |
T |
|
| Q |
269 |
catgctctcgtgttgattcctagcaacactcatgctcttctaaatcctccaaaaatctggtgg |
331 |
Q |
| |
|
||||||| |||| | ||||||||| |||| |||| ||| || ||||| | |||||||||| |
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|
| T |
5671680 |
catgctcatgtgtcggttcctagcagtgctcaagctcctctcaaccctccgagaatctggtgg |
5671742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 331
Target Start/End: Original strand, 5680978 - 5681239
Alignment:
| Q |
73 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataacattgtgtgt---tta |
169 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||| ||| |
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|
| T |
5680978 |
tattcttttaactgaaacaagaaaggaaaaacgataatagataaactgcggtgaagttggaaagaaaaatgttaatgtagataggaatgtgtgtgtgtta |
5681077 |
T |
|
| Q |
170 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagt-atgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcc |
267 |
Q |
| |
|
| |||| |||||| ||| | | | |||||||||||||| ||| ||||| || |||||| |||||| ||||| || | ||||||| ||||||||| |
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|
| T |
5681078 |
ctgatgccagcttggttaaaattatgttaatgacaacaaagtaatg--tctaacaacatctcaagttcttatatatgttctatattactttcagaactca |
5681175 |
T |
|
| Q |
268 |
tcatgctctcgtgttgattcctagcaacactcatgctcttctaaatcctccaaaaatctggtgg |
331 |
Q |
| |
|
|||||||| |||| | ||||||||| ||||||||| ||| || ||||| | |||||||||| |
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|
| T |
5681176 |
tcatgctcatgtgtcggttcctagcagtgctcatgctcctctcaaccctccgagaatctggtgg |
5681239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 5685591 - 5685643
Alignment:
| Q |
106 |
gtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataaca |
158 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
5685591 |
gtgatagataaactgcggtgaatttggaaagaaaagggttaatgtagataaca |
5685643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 5796133 - 5796212
Alignment:
| Q |
335 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatg |
414 |
Q |
| |
|
|||||| |||||||||||| || |||||||| || ||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
5796133 |
tgaaacgggagagactggataaaagatggatgtgtcatcaactggtctatatccaaccagagactgatctccataaaatg |
5796212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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