View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_high_4 (Length: 408)
Name: NF17256_high_4
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 8534261 - 8534636
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8534261 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8534360 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534361 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8534460 |
T |
|
| Q |
215 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534461 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8534560 |
T |
|
| Q |
315 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534561 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
8534636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 8599500 - 8599875
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8599500 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8599599 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599600 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8599699 |
T |
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| Q |
215 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599700 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8599799 |
T |
|
| Q |
315 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599800 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
8599875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 8613926 - 8613551
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8613926 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaa |
8613827 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613826 |
ggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8613727 |
T |
|
| Q |
215 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8613726 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8613627 |
T |
|
| Q |
315 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8613626 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgt |
8613551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 380
Target Start/End: Original strand, 14751921 - 14752279
Alignment:
| Q |
22 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
121 |
Q |
| |
|
|||||||||||| |||||||| || || ||||||||||| ||||| || ||| | |||||||| || ||||| || |||||||| |||| ||| || || |
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| T |
14751921 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgact |
14752020 |
T |
|
| Q |
122 |
ctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| || |||||||| | || |||||||| ||| |||| || | |
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| T |
14752021 |
ttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacattgcta |
14752117 |
T |
|
| Q |
222 |
gaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccg---aacctagccattacaacttgaaccatcgctat |
318 |
Q |
| |
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|||||||||| |||||||| |||| || |||||||| || | || ||| | ||||| | |||||||| ||||| ||||||||| ||||| |
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| T |
14752118 |
gaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcgtggttaaacctagcacatacaatttgaaccattgctat |
14752217 |
T |
|
| Q |
319 |
tagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagta |
380 |
Q |
| |
|
|| || | || ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14752218 |
gaggtttctatgtgaagatactactcctttgcttggtcctgttgttccagatgagtagagta |
14752279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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