View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17256_low_1 (Length: 693)

Name: NF17256_low_1
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17256_low_1
NF17256_low_1
[»] chr5 (14 HSPs)
chr5 (21-444)||(38422314-38422737)
chr5 (519-682)||(38422897-38423060)
chr5 (360-410)||(6538878-6538928)
chr5 (360-417)||(38500951-38501008)
chr5 (362-414)||(13461774-13461827)
chr5 (105-163)||(14314414-14314472)
chr5 (360-410)||(27340877-27340927)
chr5 (360-410)||(29402190-29402240)
chr5 (360-417)||(1760372-1760429)
chr5 (360-389)||(7927363-7927392)
chr5 (364-401)||(35088582-35088619)
chr5 (360-404)||(35972582-35972626)
chr5 (403-431)||(38422779-38422807)
chr5 (360-396)||(42220181-42220217)
[»] chr8 (10 HSPs)
chr8 (360-410)||(20065624-20065674)
chr8 (360-410)||(8955701-8955751)
chr8 (360-410)||(44711986-44712036)
chr8 (360-417)||(28623117-28623174)
chr8 (360-404)||(14029262-14029306)
chr8 (360-410)||(8841038-8841088)
chr8 (360-410)||(36064038-36064088)
chr8 (360-410)||(39021456-39021506)
chr8 (360-410)||(43873704-43873754)
chr8 (360-417)||(36740322-36740379)
[»] chr3 (10 HSPs)
chr3 (360-410)||(29705911-29705961)
chr3 (360-410)||(40419655-40419705)
chr3 (360-410)||(47849680-47849730)
chr3 (360-410)||(55344309-55344359)
chr3 (358-417)||(24703888-24703947)
chr3 (361-406)||(12764126-12764172)
chr3 (360-417)||(34607926-34607983)
chr3 (360-396)||(20893269-20893305)
chr3 (360-400)||(29222423-29222463)
chr3 (360-404)||(52727467-52727511)
[»] chr6 (5 HSPs)
chr6 (360-417)||(29197732-29197789)
chr6 (360-417)||(1434670-1434727)
chr6 (362-410)||(9851314-9851362)
chr6 (360-404)||(26668504-26668548)
chr6 (364-404)||(32876487-32876527)
[»] chr1 (10 HSPs)
chr1 (360-417)||(43755684-43755741)
chr1 (360-410)||(27563492-27563542)
chr1 (363-410)||(37515927-37515974)
chr1 (360-410)||(18959012-18959062)
chr1 (360-410)||(42615868-42615918)
chr1 (360-417)||(42299192-42299249)
chr1 (125-162)||(43034330-43034367)
chr1 (373-410)||(46003489-46003526)
chr1 (360-404)||(7188261-7188305)
chr1 (123-163)||(52849416-52849456)
[»] chr7 (14 HSPs)
chr7 (349-404)||(49128997-49129052)
chr7 (362-417)||(23329912-23329967)
chr7 (351-410)||(29034100-29034159)
chr7 (360-410)||(3247077-3247127)
chr7 (360-417)||(38096445-38096502)
chr7 (360-396)||(32919007-32919043)
chr7 (359-402)||(2741910-2741953)
chr7 (360-410)||(16567324-16567374)
chr7 (360-410)||(16598288-16598338)
chr7 (360-410)||(18157198-18157248)
chr7 (361-391)||(31407157-31407187)
chr7 (360-409)||(37355140-37355189)
chr7 (360-417)||(41966340-41966397)
chr7 (360-400)||(3143976-3144016)
[»] chr4 (20 HSPs)
chr4 (360-417)||(13252545-13252602)
chr4 (360-410)||(23094384-23094434)
chr4 (360-410)||(30866361-30866411)
chr4 (360-410)||(31804342-31804392)
chr4 (360-410)||(40308449-40308499)
chr4 (360-410)||(45548797-45548847)
chr4 (360-404)||(9162074-9162118)
chr4 (360-410)||(925075-925125)
chr4 (360-410)||(29694066-29694116)
chr4 (360-410)||(44571437-44571487)
chr4 (360-410)||(51389324-51389374)
chr4 (360-417)||(52263884-52263942)
chr4 (360-410)||(55996430-55996480)
chr4 (357-410)||(6239385-6239438)
chr4 (360-417)||(45779297-45779354)
chr4 (360-404)||(169521-169565)
chr4 (358-410)||(17805458-17805510)
chr4 (360-396)||(28203400-28203436)
chr4 (360-404)||(33484127-33484171)
chr4 (360-404)||(44170638-44170682)
[»] chr2 (15 HSPs)
chr2 (348-410)||(36180501-36180561)
chr2 (360-417)||(13553155-13553212)
chr2 (360-410)||(3091749-3091799)
chr2 (360-410)||(9202529-9202579)
chr2 (360-410)||(26321710-26321760)
chr2 (360-410)||(26321878-26321928)
chr2 (360-410)||(36816429-36816479)
chr2 (360-402)||(44085282-44085324)
chr2 (360-396)||(5095980-5096016)
chr2 (360-404)||(6365194-6365238)
chr2 (360-400)||(17112849-17112889)
chr2 (360-400)||(26802251-26802291)
chr2 (361-417)||(29170823-29170879)
chr2 (373-417)||(33030108-33030152)
chr2 (360-404)||(40326135-40326179)
[»] scaffold0121 (1 HSPs)
scaffold0121 (360-410)||(3935-3986)
[»] scaffold0154 (1 HSPs)
scaffold0154 (360-410)||(9861-9911)
[»] scaffold0119 (1 HSPs)
scaffold0119 (360-404)||(2245-2289)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 38422314 - 38422737
Alignment:
Q  21 agatctgatcggacatctgtgcaaagtcatcgtagattgtcaatgaatcgaaagtaaactcatggtatatttcaaaattcaattattaatttgtttatcg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  38422314 agatctgatcggacatctgtgcaaagtcatcgtagattgtcaatgtatcgaaagtaaactcatggtatatttcaaaatttaattattaatttttttatcg 38422413  T
Q  121 ataattgatattactcacgttactctttaaagtgagttgttcatattagagtgagtcaaatccatcttttatagtggagttgtgatggaattacttacta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422414 ataattgatattactcacgttactctttaaagtgagttgttcacattagagtgagtcaaatccatcttttatagtggagttgtgatggaattacttacta 38422513  T
Q  221 acaaccaagctatttttattctcctaatatcgttctagctaagtgtgtagccatcgaggaagaggagcaacaatagggatcttggacacgtaaaatatcc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422514 acaaccaagctatttttattctcctaatatcgttctagctaagtgtgtagccatcgaggaagaggagcaacaatagggatcttggacacgtaaaatatcc 38422613  T
Q  321 tctggttcattggaagatcaaatttgcttgagaaataatatatttatacaatcattttgtgataattttttgacaattttctctttcataatcatatatg 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38422614 tctggttcattggaagatcaaatttgcttgagaaataatatatttatacaatcattttatgataattttttgacaattttctctttcataatcatatatg 38422713  T
Q  421 cgtagtttttccgttgtgtacaat 444  Q
    ||||||||||||||||||||||||    
T  38422714 cgtagtttttccgttgtgtacaat 38422737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 519 - 682
Target Start/End: Original strand, 38422897 - 38423060
Alignment:
Q  519 tttctaccgcatcactttagatgagattcacaatgttcttgaggagtttaaacacacatataatttctattggtaatctataataaaaaatagcttacaa 618  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38422897 tttctaccgcatcactttagatgagattcacaatgtttttgaggagtttaaacacacatataatttctattggtaatctataaaaaaaaatagcttacaa 38422996  T
Q  619 ttacttggacaatttttattattaaactattgttaacgtgaataaaattattcatatcacctat 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422997 ttacttggacaatttttattattaaactattgttaacgtgaataaaattattcatatcacctat 38423060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 6538878 - 6538928
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  6538878 atatttgtacaattattttgtgataattttttgacaactttctctttcata 6538928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 38500951 - 38501008
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| |||||||||| ||||||||||||| ||||||||||||| ||||||    
T  38500951 atatttgtacaaccattttgtgacaattttttgacaactttctctttcatactcatat 38501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 13461774 - 13461827
Alignment:
Q  362 atttatacaatcattttgtgataa-ttttttgacaattttctctttcataatca 414  Q
    |||||||||||||||||||||||| |||  |||||||||||||| |||||||||    
T  13461774 atttatacaatcattttgtgataactttcgtgacaattttctctctcataatca 13461827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 14314414 - 14314472
Alignment:
Q  105 attaatttgtttatcgataattgatattactcacgttactctttaaagtgagttgttca 163  Q
    |||||| |||| ||||||| ||||||| |||||| ||| ||||| ||||||||||||||    
T  14314414 attaatatgttcatcgatagttgatatcactcactttattctttgaagtgagttgttca 14314472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 27340877 - 27340927
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  27340877 atatttgtacaatcactttattataattttttgacaattttctctctcata 27340927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 29402190 - 29402240
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||| ||||| ||||||||||||||| ||||| |||||||    
T  29402190 atatttgtacaatcactttgtaataattttttgacaactttctttttcata 29402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 1760372 - 1760429
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||| |||||||||||| |||||  | ||||| |||||||||||||||||| ||||||    
T  1760372 atatgtatacaatcattgtgtgacgactttttcacaattttctctttcatactcatat 1760429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 389
Target Start/End: Original strand, 7927363 - 7927392
Alignment:
Q  360 atatttatacaatcattttgtgataatttt 389  Q
    ||||||||||||||||||||||||||||||    
T  7927363 atatttatacaatcattttgtgataatttt 7927392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 35088582 - 35088619
Alignment:
Q  364 ttatacaatcattttgtgataattttttgacaattttc 401  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  35088582 ttatacaatcattttgtgatagtttttagacaattttc 35088619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 35972582 - 35972626
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| |||||||||||||| | | |||||||||||||||||||    
T  35972582 atatttgtacaatcattttgttacatttttttgacaattttctct 35972626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 38422779 - 38422807
Alignment:
Q  403 ctttcataatcatatatgcgtagtttttc 431  Q
    |||||||||||||||||||||||||||||    
T  38422779 ctttcataatcatatatgcgtagtttttc 38422807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 42220181 - 42220217
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaa 396  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  42220181 atatttatacaattattttatgataattttttgacaa 42220217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 20065624 - 20065674
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  20065624 atatttatacaataattttgtgataattttttgacaattttctctctcata 20065674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 8955751 - 8955701
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||| ||||||||||||||||||||||| ||||||||  |||||||||    
T  8955751 atatttaaacaatcattttgtgataatttttagacaatttcttctttcata 8955701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 44711986 - 44712036
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  44711986 atatttatacaattaatttgtaataattttttgacaattttctctctcata 44712036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 28623174 - 28623117
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  28623174 atatttgtacaaccattatgtgataactttttgacaactttctctttcatactcatat 28623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 14029306 - 14029262
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  14029306 atatttgtataatcaatttgtgataattttttgacaattttctct 14029262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 8841038 - 8841088
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| || ||||||| ||||||||||||||||||||| |||||    
T  8841038 atatttgtacaaccactttgtgagaattttttgacaattttctctatcata 8841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 36064038 - 36064088
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||||||| || |||| ||||||||||||| |||||    
T  36064038 atatttgtacaatcattttgtgacaacttttggacaattttctctctcata 36064088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 39021506 - 39021456
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| ||||||||||||| |||||||||| | |||||||||||    
T  39021506 atatttgtacaaccattttgtgataactttttgacaactctctctttcata 39021456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 43873754 - 43873704
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||||||| ||||||||||||| | |||||||||||    
T  43873754 atatttgtacaaccattttgtgacaattttttgacaactctctctttcata 43873704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 36740322 - 36740379
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||||||||| |||||||||||| ||||| |||| || ||||| ||||||    
T  36740322 atatttgtacaatcatttagtgataatttttagacaactttccctctcatattcatat 36740379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 29705911 - 29705961
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29705911 atatttatacaattattttgtgataattttttgataattttctctttcata 29705961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 40419705 - 40419655
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  40419705 atatttgtacaatcattttgtgataatttttagacaattttctctctcata 40419655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 47849680 - 47849730
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||| ||||    
T  47849680 atatttgtacaaccattttgtgataattttttgacaactttctcttacata 47849730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 55344359 - 55344309
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| ||||||||||||| || |||||||||||||||||||||    
T  55344359 atatttgtacaaccattttgtgataacttcttgacaattttctctttcata 55344309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 24703888 - 24703947
Alignment:
Q  358 atatatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||||| ||||| |||||| |||||||||||  ||||||||||||||| || ||||||    
T  24703888 atatatttgtacaaccattttttgataatttttgaacaattttctctttcttactcatat 24703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 12764172 - 12764126
Alignment:
Q  361 tatttatacaatcattttgtgataatt-ttttgacaattttctcttt 406  Q
    |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  12764172 tatttatataatcattttgtgataatttttttaacaattttctcttt 12764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 34607983 - 34607926
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| || ||||||| ||||||| || |||||||||||||||| ||||||    
T  34607983 atatttgtacaaccactttgtgacaatttttagataattttctctttcatactcatat 34607926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 20893305 - 20893269
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaa 396  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  20893305 atatttgtacaaccattttgtgataattttttgacaa 20893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 29222463 - 29222423
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaatttt 400  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  29222463 atatttatacaatcattttatgataatttttgaacaatttt 29222423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 52727511 - 52727467
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| |||||||| ||| ||||||||||||||||| |||||||    
T  52727511 atatttgtacaatcactttatgataattttttgacaactttctct 52727467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 29197732 - 29197789
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  29197732 atatttgtacaatcattttgtgataatttttggacaattttctctctcatattcatat 29197789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 1434727 - 1434670
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| |||||| | ||||||||||||||||||||||||| ||| ||||| ||||||    
T  1434727 atatttgtacaattaatttgtgataattttttgacaattttttctctcatattcatat 1434670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 9851362 - 9851314
Alignment:
Q  362 atttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||| |||||||||||||||||||| |||||| |||||| ||| |||||    
T  9851362 atttgtacaatcattttgtgataatattttgataattttttctctcata 9851314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 26668504 - 26668548
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||    
T  26668504 atatttgtacaatcattttgctataattttttgataattttctct 26668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 32876527 - 32876487
Alignment:
Q  364 ttatacaatcattttgtgataattttttgacaattttctct 404  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  32876527 ttatacaatcattttgtgacaatttttaaacaattttctct 32876487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 43755741 - 43755684
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  43755741 atatttgtacaaccattttatgataattttttgacaattttctctttcatactcatat 43755684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 27563492 - 27563542
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  27563492 atatttgtacaatcattttgctataattttttgacaattttctctctcata 27563542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 37515927 - 37515974
Alignment:
Q  363 tttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||||  ||||| ||||||||||||||||||||||||| |||||    
T  37515927 tttatacaactattttatgataattttttgacaattttctctctcata 37515974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 18959012 - 18959062
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||||||| |||||||| | || |||||||||||||||||| |||||    
T  18959012 atatttatacaaccattttgttacaactttttgacaattttctctctcata 18959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 42615868 - 42615918
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||| | ||||||||||||||| ||| |||||||||    
T  42615868 atatttgtacaatcattttttaataattttttgacaactttttctttcata 42615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 42299249 - 42299192
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| |||||||||||||||||| ||||||||| | | ||||| ||||||    
T  42299249 atatttgtacaaccattttgtgataatttttagacaattttttttctcatattcatat 42299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 43034367 - 43034330
Alignment:
Q  125 ttgatattactcacgttactctttaaagtgagttgttc 162  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  43034367 ttgatattactcactttactctttaaagtgaattgttc 43034330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 46003489 - 46003526
Alignment:
Q  373 cattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  46003489 cattttgtgacaattttttaacaattttctctttcata 46003526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 7188261 - 7188305
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| ||| || ||||||||||||||||| |||||||||||||    
T  7188261 atatttgtacgattattttgtgataatttttagacaattttctct 7188305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 52849456 - 52849416
Alignment:
Q  123 aattgatattactcacgttactctttaaagtgagttgttca 163  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  52849456 aattgatattactcactttactttctaaagtgagttgttca 52849416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 49129052 - 49128997
Alignment:
Q  349 tgagaaataatatatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||||||||||||||| |||| |||||||||| || ||||||||||||||||||    
T  49129052 tgagaaataatatatttaaacaaacattttgtgacaactttttgacaattttctct 49128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 23329912 - 23329967
Alignment:
Q  362 atttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||| ||||||    
T  23329912 atttgtacaaccattttattataattttttgacaattttctctttcatactcatat 23329967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 29034100 - 29034159
Alignment:
Q  351 agaaataatatatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||| || |||||| |||||||||||||||| |||||||||| |||||||||| |||||    
T  29034100 agaaaaaagatatttgtacaatcattttgtgacaattttttgataattttctctctcata 29034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 3247077 - 3247127
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||||||||| |||| ||||||||||||||||||| |||||||    
T  3247077 atatttgtacaatcatttagtgacaattttttgacaattttctatttcata 3247127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 38096502 - 38096445
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| |||||||||| ||||||||||||| | ||||||||||| ||||||    
T  38096502 atatttgtacaaccattttgtgacaattttttgacaactctctctttcatactcatat 38096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 32919043 - 32919007
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaa 396  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32919043 atatttatacaatcattttgtgacaattttttgacaa 32919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 2741953 - 2741910
Alignment:
Q  359 tatatttatacaatcattttgtgataattttttgacaattttct 402  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  2741953 tatatttgtacaattattttatgataattttttgacaattttct 2741910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 16567324 - 16567374
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||| | |||| ||||||||||||||||||||||||    
T  16567324 atatttgtacaaccattttattataactttttgacaattttctctttcata 16567374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 16598338 - 16598288
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||| | |||| ||||||||||||||||||||||||    
T  16598338 atatttgtacaaccattttattataactttttgacaattttctctttcata 16598288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 18157248 - 18157198
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| || ||||||||||||||| ||||||||||||| |||||    
T  18157248 atatttgtacaaccactttgtgataatttttagacaattttctctctcata 18157198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 31407157 - 31407187
Alignment:
Q  361 tatttatacaatcattttgtgataatttttt 391  Q
    |||||||||||||||||||||||||||||||    
T  31407157 tatttatacaatcattttgtgataatttttt 31407187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 37355140 - 37355189
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcat 409  Q
    ||||||||||||| ||||| |||||||||||  |||| ||||||||||||    
T  37355140 atatttatacaattattttatgataatttttgaacaactttctctttcat 37355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 41966340 - 41966397
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| || ||||||| ||||||||||||| ||||| ||||||| ||||||    
T  41966340 atatttgtacaaccactttgtgacaattttttgacaactttctatttcatactcatat 41966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 3144016 - 3143976
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaatttt 400  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  3144016 atatttgtacaatcattttataataattttttgacaatttt 3143976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 13252545 - 13252602
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||| | ||||||    
T  13252545 atatttatataatcattttgtgataattttttgacaactttctatttcaaactcatat 13252602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 23094384 - 23094434
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||||||||||||||||| |||| ||||| |||||||||||||    
T  23094384 atatttgtacaatcattttgtgataacttttagacaactttctctttcata 23094434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 30866361 - 30866411
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||| |||||| |||||||||| |||||||||||||    
T  30866361 atatttgtacaatcattttatgataaatttttgacaactttctctttcata 30866411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 31804392 - 31804342
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||| |||||||||||||||||| |||||||||| |||||    
T  31804392 atatttgtacaatcactttgtgataattttttgataattttctctctcata 31804342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 40308449 - 40308499
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||| | ||||||||||||||| |||||||||||||    
T  40308449 atatttgtacaatcattttataataattttttgacaactttctctttcata 40308499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 45548847 - 45548797
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||||||||||||||||||||| ||| |||||||||    
T  45548847 atatttgtacaaccattttgtgataattttttgacaactttttctttcata 45548797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 9162074 - 9162118
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  9162074 atatttgtacaatcattttgtgacaactttttgacaattttctct 9162118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 925125 - 925075
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||||||| |||||||||| || |||| ||||||||||||| |||||    
T  925125 atatttatacaaccattttgtgacaacttttagacaattttctctctcata 925075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 29694116 - 29694066
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||| || ||||||||||||||||| || ||||||||||||||||    
T  29694116 atatttctactattattttgtgataatttttagataattttctctttcata 29694066  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 44571487 - 44571437
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||| |||||    
T  44571487 atatttatacaattaatttgtaataattttttgataattttctctctcata 44571437  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 51389324 - 51389374
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||||||||| || | ||||||||||||| |||||||||||||    
T  51389324 atatttgtacaatcatttagtaacaattttttgacaactttctctttcata 51389374  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 52263942 - 52263884
Alignment:
Q  360 atatttatacaatcattttgtgataattttt-tgacaattttctctttcataatcatat 417  Q
    ||||||||||||||||||| ||||||||||| | |||| ||||||| ||||| ||||||    
T  52263942 atatttatacaatcattttttgataatttttataacaactttctctctcatactcatat 52263884  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 55996430 - 55996480
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||| | | ||||||||||||||||||||| |||||    
T  55996430 atatttgtacaatcattttctaacaattttttgacaattttctctctcata 55996480  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 6239385 - 6239438
Alignment:
Q  357 aatatatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||| ||||| |||||||  ||||||||||||||| ||||||| |||||    
T  6239385 aatatatttgtacaaccattttgcaataattttttgacaactttctctctcata 6239438  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 45779354 - 45779297
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||| | ||||| ||||||    
T  45779354 atatttatacaactattttgttataattttttgacaactttctttctcatactcatat 45779297  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 169565 - 169521
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| ||||| |||||||||| || ||||||||||||||||||    
T  169565 atatttgtacaaccattttgtgacaactttttgacaattttctct 169521  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 17805458 - 17805510
Alignment:
Q  358 atatatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||| |||||  ||||| | ||||||||||||||||||||||| |||||    
T  17805458 atatatttgtacaactattttttaataattttttgacaattttctctctcata 17805510  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 28203400 - 28203436
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaa 396  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28203400 atatttgtacaatcattttgtaataattttttgacaa 28203436  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 33484171 - 33484127
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||    
T  33484171 atatttgtacaaccattttgtgataatttttggacaactttctct 33484127  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 44170682 - 44170638
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| ||||| |||||||| ||||||||||||||| |||||||    
T  44170682 atatttgtacaaccattttgttataattttttgacaactttctct 44170638  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 36180501 - 36180561
Alignment:
Q  348 ttgagaaataatatatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||||||||||| ||||  |||| ||||| ||||||||||||||||||| |||||||||||    
T  36180501 ttgagaaataatattttta--caattattttatgataattttttgacaattatctctttcata 36180561  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 13553155 - 13553212
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||| ||||| || ||||||||||||||| ||||||||||||| ||||| ||||||    
T  13553155 atatttgtacaaccactttgtgataatttttggacaattttctctctcatactcatat 13553212  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 3091749 - 3091799
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||  |||||||||||| |||||||||||||||||| |||||    
T  3091749 atatttgtacaactattttgtgataactttttgacaattttctctctcata 3091799  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 9202579 - 9202529
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||    
T  9202579 atatttctacaaccattttatgacaattttttgacaactttctctttcata 9202529  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 26321760 - 26321710
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| ||||||||||||| ||||||||||||| |||| |||||    
T  26321760 atatttgtacaaccattttgtgataactttttgacaatttcctctatcata 26321710  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 26321928 - 26321878
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| ||||| ||||||||||||| ||||||||||||| |||| |||||    
T  26321928 atatttgtacaaccattttgtgataactttttgacaatttcctctatcata 26321878  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 36816479 - 36816429
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    ||||||||||||  ||||| ||||||||||||||||| | |||||||||||    
T  36816479 atatttatacaactattttatgataattttttgacaactctctctttcata 36816429  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 44085282 - 44085324
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttct 402  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||    
T  44085282 atatttatacaattattttgtgacaatttttggacaattttct 44085324  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 5096016 - 5095980
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaa 396  Q
    |||||| |||||||||||||||||||||||| |||||    
T  5096016 atatttgtacaatcattttgtgataatttttggacaa 5095980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 6365194 - 6365238
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| ||||| || ||||||| |||||||||||||||||||||    
T  6365194 atatttgtacaaccactttgtgacaattttttgacaattttctct 6365238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 17112889 - 17112849
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaatttt 400  Q
    ||||||||| ||| ||||||||||||||||| |||||||||    
T  17112889 atatttatataattattttgtgataatttttggacaatttt 17112849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 26802291 - 26802251
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaatttt 400  Q
    ||||||||||||| |||||||||||||||||  ||||||||    
T  26802291 atatttatacaattattttgtgataatttttgaacaatttt 26802251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 29170879 - 29170823
Alignment:
Q  361 tatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    ||||| ||||| |||||||| | ||||||||||||  ||||||||||||| ||||||    
T  29170879 tatttgtacaaccattttgttacaattttttgacatctttctctttcatattcatat 29170823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 33030152 - 33030108
Alignment:
Q  373 cattttgtgataattttttgacaattttctctttcataatcatat 417  Q
    |||||||||||||||||||||||| ||||||| || || ||||||    
T  33030152 cattttgtgataattttttgacaactttctctctcgtactcatat 33030108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 40326135 - 40326179
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||||||||| ||| |||| | |||||||||||||||||||||    
T  40326135 atatttatacaaccatgttgtcacaattttttgacaattttctct 40326179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 3986 - 3935
Alignment:
Q  360 atatttatacaatcattttgtgataattttt-tgacaattttctctttcata 410  Q
    |||||||||||||||||||||||||||||||  || |||||||||| |||||    
T  3986 atatttatacaatcattttgtgataatttttgagataattttctctctcata 3935  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 9911 - 9861
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctctttcata 410  Q
    |||||| |||||||||||| | | ||||||||||||||||||||| |||||    
T  9911 atatttgtacaatcattttttcacaattttttgacaattttctctctcata 9861  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 2289 - 2245
Alignment:
Q  360 atatttatacaatcattttgtgataattttttgacaattttctct 404  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||    
T  2289 atatttgtacaatcattttgctataattttttgataattttctct 2245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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