View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17256_low_10 (Length: 324)

Name: NF17256_low_10
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17256_low_10
NF17256_low_10
[»] chr2 (11 HSPs)
chr2 (18-316)||(30484606-30484904)
chr2 (23-316)||(30437481-30437774)
chr2 (25-316)||(30476435-30476726)
chr2 (42-316)||(30431245-30431519)
chr2 (110-308)||(30469379-30469577)
chr2 (110-308)||(30425280-30425478)
chr2 (29-316)||(30384914-30385201)
chr2 (108-316)||(8378905-8379113)
chr2 (111-316)||(30395748-30395953)
chr2 (109-316)||(23783261-23783468)
chr2 (109-316)||(23768614-23768821)
[»] chr5 (1 HSPs)
chr5 (109-316)||(41626754-41626961)
[»] chr8 (4 HSPs)
chr8 (94-308)||(15858459-15858673)
chr8 (94-308)||(15865527-15865741)
chr8 (203-306)||(15844326-15844429)
chr8 (203-306)||(15851561-15851664)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 30484606 - 30484904
Alignment:
Q  18 gagccgttcacaaagacgtaaaagttggaaacctaacattacctgccggagtccagattaccttgccaatagtttggattcaccacaaccatgaactatg 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30484606 gagccattcacaaagacgtaaaagttggaaacctaacattacctgccggagtccagattaccttaccaatagtttggattcaccacaaccatgaactatg 30484705  T
Q  118 gggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30484706 gggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcct 30484805  T
Q  218 agaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 316  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30484806 agaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 30484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 30437481 - 30437774
Alignment:
Q  23 gttcacaaagacgtaaaagttggaaacctaacattacctgccggagtccagattaccttgccaatagtttggattcaccacaaccatgaactatggggtg 122  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||| || |||||||| || |||||||   |||||||  ||   |||||||||||||    
T  30437481 gttcacaaagatgtgaaacttggaaacctaacattacctgccggagtgcaaattaccttaccgatagttttagttcaccatgactccgaactatggggtg 30437580  T
Q  123 aagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaat 222  Q
    | |||||||||||||||||||||||||||||| | ||||| ||||  |||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  30437581 acgatgctaaggtgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggagggggtcctagaat 30437680  T
Q  223 ttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 316  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||| || ||||||| || | ||||||||| |||||||||||| | ||||||    
T  30437681 ttgcattggacagaacttttctatgttggaagcaaagatggcgatagcaatgattttacaacgtttctcattcgaactttctccatcttatgct 30437774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 30476435 - 30476726
Alignment:
Q  25 tcacaaagacgtaaaagttggaaacctaacattacctgccggagtccagattaccttgccaatagtttggattcaccacaaccatgaactatggggtgaa 124  Q
    ||||||||| || ||| ||||||||||||||||||| |||||||| || |||||||| || ||||||| | |||||||  ||   |||||||||||||||    
T  30476435 tcacaaagatgtcaaacttggaaacctaacattaccagccggagtgcaaattaccttaccgatagttttggttcaccatgactccgaactatggggtgaa 30476534  T
Q  125 gatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaattt 224  Q
    |||||||||||||||||||||||||||||| | | |||| |||| |||||||||||||| |||  ||||||||||||||||||||||||||| |||||||    
T  30476535 gatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggagggggtccaagaattt 30476634  T
Q  225 gcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 316  Q
    ||||||||||||| ||||| |||||||||||||||||||||||  || |||||||  |  | ||||||||||||||||||||| | ||||||    
T  30476635 gcattggacaaaatttttccatgttggaagcaaagatggcaatggcaatgattttaaaaaaattctcatttgaactttctccatcttatgct 30476726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 42 - 316
Target Start/End: Original strand, 30431245 - 30431519
Alignment:
Q  42 ttggaaacctaacattacctgccggagtccagattaccttgccaatagtttggattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaa 141  Q
    |||||||||||||||||||||| ||||| ||| ||  |||  | ||| ||| | |||||||  ||   ||||||||||||||||||||||||||||||||    
T  30431245 ttggaaacctaacattacctgcaggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaa 30431344  T
Q  142 tcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaatttgcattggacaaaacttt 241  Q
    ||| ||||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  30431345 tcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggacaaaacttt 30431444  T
Q  242 tcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 316  Q
    || |||||||||||||||||||||||| || ||||||| || | |||||||||||||||||||||| | ||||||    
T  30431445 tccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccatcttatgct 30431519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 30469379 - 30469577
Alignment:
Q  110 gaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggag 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||| ||||||||| ||||| |||||||||||||||||||||| ||    
T  30469379 gaactatggggtgaagatgctaaggtgttcaatcccgagagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcag 30469478  T
Q  210 ggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaa 308  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||| || | |||||||||||||||||||||||    
T  30469479 ggggtcctagaatttgcattggacagaacttttccatgttggaagcaaagatggcaatagcaatgattttacaacgtttctcatttgaactttctccaa 30469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 30425280 - 30425478
Alignment:
Q  110 gaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggag 209  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  30425280 gaactatggggtgatgatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggag 30425379  T
Q  210 ggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaa 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| || | ||||   || |||||||||||||    
T  30425380 ggggtcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggcaatagcaatgattttacaacgtttcgacttcgaactttctccaa 30425478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 30384914 - 30385201
Alignment:
Q  29 aaagacgtaaaagttggaaacctaacattacctgccggagtccagattaccttgccaatagtttggattcaccacaaccatgaactatggggtgaagatg 128  Q
    ||||| || ||| ||||||| |||||| ||||||| |||||  |||||  ||| |||||  ||| |||||||||  ||   |||||||||||||| ||||    
T  30384914 aaagatgtgaaacttggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatg 30385013  T
Q  129 ctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaatttgcat 228  Q
    ||||  ||||||||||||| ||||||   | |||| |||| |||||||||||||| |||  ||||||||||||||||||| |||||||| ||||||||||    
T  30385014 ctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcat 30385113  T
Q  229 tggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacctatgct 316  Q
    |||||||||||||||  |  |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |||||||||    
T  30385114 tggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgct 30385201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 108 - 316
Target Start/End: Complemental strand, 8379113 - 8378905
Alignment:
Q  108 atgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgg 207  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||  |  || ||||||||||||    
T  8379113 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttgg 8379014  T
Q  208 agggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctcca 307  Q
    ||||||||||||| ||||||| ||||||||||||||  | |||||||||||||||||| |  || ||||||| ||  ||||||  |||||||||||||||    
T  8379013 agggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcca 8378914  T
Q  308 acctatgct 316  Q
    |||||||||    
T  8378913 acctatgct 8378905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 30395748 - 30395953
Alignment:
Q  111 aactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagg 210  Q
    |||||||||| || ||||||||  |||||||||||||||||||| | | |||| |||| ||||||||||||||||||  ||||||||||||||||||| |    
T  30395748 aactatggggcgatgatgctaaaatgttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatg 30395847  T
Q  211 gggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaacc 310  Q
    |||||| ||||||||||||||||||||||||||  |  ||||||||||||||||| |  || |||||||||| ||||| ||||||||||||||  |||||    
T  30395848 gggtccaagaatttgcattggacaaaacttttccctaatggaagcaaagatggcattgtcaatgattttgcaacatttttcatttgaactttcctcaacc 30395947  T
Q  311 tatgct 316  Q
    ||||||    
T  30395948 tatgct 30395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 109 - 316
Target Start/End: Complemental strand, 23783468 - 23783261
Alignment:
Q  109 tgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgga 208  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| | |  ||| |||| ||||||||||| ||||||  ||||| |||||| ||||||    
T  23783468 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23783369  T
Q  209 gggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaa 308  Q
    | |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||  || |||| |||||||||||||||| ||    
T  23783368 gcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaatggcattgattttaaagaatttttcatttgaactttctcaaa 23783269  T
Q  309 cctatgct 316  Q
    | ||||||    
T  23783268 catatgct 23783261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 316
Target Start/End: Original strand, 23768614 - 23768821
Alignment:
Q  109 tgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgga 208  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| | |  ||| |||| ||||||||||| ||||||  ||||| |||||| ||||||    
T  23768614 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23768713  T
Q  209 gggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaa 308  Q
    |  ||||||||||| ||||||||||| | ||||||  | ||||||||||||||||||||  |||||||||| ||| |||| |||||||||||||||| ||    
T  23768714 gcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggcaatggcattgattttacagaatttttcatttgaactttctcaaa 23768813  T
Q  309 cctatgct 316  Q
    | ||||||    
T  23768814 catatgct 23768821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 316
Target Start/End: Complemental strand, 41626961 - 41626754
Alignment:
Q  109 tgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgga 208  Q
    |||| |||||||||| ||||||||  ||||||||||||| |||||| | | |||| |||| |||||||| || ||||||  |||||||||||||||||||    
T  41626961 tgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttgga 41626862  T
Q  209 gggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaactttctccaa 308  Q
     |||||||||| || |||||||| |||||||||||  | |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||     
T  41626861 tggggtcctaggatctgcattgggcaaaacttttctctattggaagcaaagatggcaatgacattgattttacagcatttctcatttcaactttctccag 41626762  T
Q  309 cctatgct 316  Q
    ||||||||    
T  41626761 cctatgct 41626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 308
Target Start/End: Complemental strand, 15858673 - 15858459
Alignment:
Q  94 gattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattca 193  Q
    |||||||||  | ||||| ||||||||||| ||||| |||| |||||| ||||| || ||||| |||||| || | || |||||||| ||   |  |||     
T  15858673 gattcaccaagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttct 15858574  T
Q  194 ttttttccatttggagggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcat 293  Q
    | ||| || |||||| ||||||||||||||||  |||||||||||||| |  | || ||||||||||| ||| || ||||| |  ||||| |||||||||    
T  15858573 tatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagtatcattgttgctgcagaatttctcat 15858474  T
Q  294 ttgaactttctccaa 308  Q
    | |||||||||||||    
T  15858473 tcgaactttctccaa 15858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 308
Target Start/End: Complemental strand, 15865741 - 15865527
Alignment:
Q  94 gattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattca 193  Q
    |||||||||  | ||||| ||||||||||| ||||| |||| |||||| ||||| || ||||| |||||| || |||| || ||||| || | |  |||     
T  15865741 gattcaccaagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttct 15865642  T
Q  194 ttttttccatttggagggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcat 293  Q
    | ||| || |||||| ||||||||||||||||  |||||||||||||| |  |  | ||||||||||| |||||  ||||| |  ||||| |||||||||    
T  15865641 tatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaatttcattgctgctgcagaatttctcat 15865542  T
Q  294 ttgaactttctccaa 308  Q
    | |||||||||||||    
T  15865541 tcgaactttctccaa 15865527  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 15844429 - 15844326
Alignment:
Q  203 tttggagggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaacttt 302  Q
    |||||| ||||||||||||||||  |||||||||||||| |  | || ||||||||||| |||||| ||||| |  ||||| ||||||||||||||||||    
T  15844429 tttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctcatttgaacttt 15844330  T
Q  303 ctcc 306  Q
    ||||    
T  15844329 ctcc 15844326  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 15851664 - 15851561
Alignment:
Q  203 tttggagggggtcctagaatttgcattggacaaaacttttcaatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaacttt 302  Q
    |||||| ||||||||||||||||  |||||||||||||| |  | || ||||||||||| |||||| || || |  ||||| |||||||||| |||||||    
T  15851664 tttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctcattcgaacttt 15851565  T
Q  303 ctcc 306  Q
    ||||    
T  15851564 ctcc 15851561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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