View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_14 (Length: 269)
Name: NF17256_low_14
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13852897 - 13853115
Alignment:
| Q |
1 |
agttttagtttgcatttttgtttaatatagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagtatgtgttctgcatctgtttg |
100 |
Q |
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| T |
13852897 |
agttttagtttgcatttttgtttaatttagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagtatgtgttctgcatctgtttg |
13852996 |
T |
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| Q |
101 |
aatgcaagtttggtgtcatgcacacagtaaagaatcaaaattagtaggctatcatagattagtaaaattcttatgattttgatcaaatcaaaatcaggat |
200 |
Q |
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| T |
13852997 |
aatgcaagtttggtgtcatgcacacagtaaagaatcaaaattagtaggttatcatagattagtaaaattcttatgattttgatcaaatcaaaatcaggat |
13853096 |
T |
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| Q |
201 |
caaaatctatctcctcgca |
219 |
Q |
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| T |
13853097 |
caaaatctatctcctcgca |
13853115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 13883350 - 13883469
Alignment:
| Q |
12 |
gcatttttgtttaatatagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagttt |
111 |
Q |
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|||||||| |||||||||||||| ||||||||| | | ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
13883350 |
gcatttttatttaatatagatatggtagcaagaagaaatcaattacaacaattgatctctagtcaaagtatgtgttcttcatctgtttgaatgcaagttt |
13883449 |
T |
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| Q |
112 |
ggtgtcatgcacacagtaaa |
131 |
Q |
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| T |
13883450 |
ggtgtcaagcacacagtaaa |
13883469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 14398216 - 14398095
Alignment:
| Q |
10 |
ttgcatttttgtttaatatagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagt |
109 |
Q |
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| T |
14398216 |
ttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaagaattgacctctagtggaagtatgtgttctgcatctgtttaaatgcaatt |
14398117 |
T |
|
| Q |
110 |
ttggtgtcatgcacacagtaaa |
131 |
Q |
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| T |
14398116 |
ttggtgtcaatcacacagtaaa |
14398095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 14392061 - 14391953
Alignment:
| Q |
10 |
ttgcatttttgtttaatatagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagt |
109 |
Q |
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| T |
14392061 |
ttgcatttttatttaatacagatgtggtagtaagaggaaatcacttgcaacaattgacctcgggtgaaagcatgtgttctgcatctgtttgaatgcaatt |
14391962 |
T |
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| Q |
110 |
ttggtgtca |
118 |
Q |
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| T |
14391961 |
ttggtgtca |
14391953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 10222008 - 10221973
Alignment:
| Q |
217 |
gcatcattggactcataggagatcggtaatcaatag |
252 |
Q |
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| T |
10222008 |
gcatcattggactcgtaggagatcggtaatcaatag |
10221973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 13853127 - 13853162
Alignment:
| Q |
217 |
gcatcattggactcataggagatcggtaatcaatag |
252 |
Q |
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| T |
13853127 |
gcatcattggactcataggagatccgtaatcaatag |
13853162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 14396275 - 14396221
Alignment:
| Q |
76 |
aaagtatgtgttctgcatctgtttgaatgcaagtttggtgtcatgcacacagtaa |
130 |
Q |
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||||||| |||||||||| ||||| ||||||||||||| |||| ||||| ||||| |
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| T |
14396275 |
aaagtatatgttctgcatttgtttcaatgcaagtttggcgtcaagcacatagtaa |
14396221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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