View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_2 (Length: 630)
Name: NF17256_low_2
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 39592111 - 39592485
Alignment:
| Q |
19 |
atcactgcaccttttctgaggtaggttgttacaaaggcaagagactagtgagttcaactaaaaaaggtatatggatggtgatatgaaacagatgg-aaaa |
117 |
Q |
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| T |
39592111 |
atcactgcaccttttctgaggtaggttgttacaaaggcaagagactagtgagttcaactaaaaaaggtatatggatggtgatatgaaacagatgggaaaa |
39592210 |
T |
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| Q |
118 |
gtaagtaacatgtgattggaaggtgagtttctctttaatcttggataaaacaagatctccatttttatagtattgtgagtgcttctgtacagctcattcg |
217 |
Q |
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| T |
39592211 |
gtaagtaacatgtgattggaaggtgagtttctctttaatcttggataaaacaagatctctatttttatagtattgtgagtgcttctgtacagctcattcg |
39592310 |
T |
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| Q |
218 |
catgaaagatcatttaatagtgcagtaatcaatttcaccaatctgctagcttaaaaatcataaaaacctcaaattatattgatacacattaaagagtgaa |
317 |
Q |
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| T |
39592311 |
catgaaagatcatttaatagtgcagtaatcaatttcaccaatctgctagcttaaaaatcataaaaacctcaaattatactgatacacattaaagagtgaa |
39592410 |
T |
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| Q |
318 |
taatataaagggtttactataaaacttctcgttctattttttggtttgttaacaagcagtaatcaacagcagaaa |
392 |
Q |
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| T |
39592411 |
taatataaagggtttactataaaacttctcgttctattttttggtttgttgacaagcagtaatcaacagcagaaa |
39592485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 452 - 630
Target Start/End: Original strand, 39592542 - 39592720
Alignment:
| Q |
452 |
atgctcaatgcacaatacaaaaaagcttcgaatataaaacaagtgtttgcatgggttgatgctcaatgttgattgtcccctttagtaatcacaagtgggg |
551 |
Q |
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| T |
39592542 |
atgctcaatgcacggtacaaaaaagctccgaatataaaacaagtgtttgcatgggttgatgctcaatgttgattgtcccctttagtaatcacaagtgggg |
39592641 |
T |
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| Q |
552 |
tactggtttttaattttctcctataatggtcattagctataggttgctgtcatcatcctattttattttagctgtcttt |
630 |
Q |
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| T |
39592642 |
tactggtttttaattttctcctataatggtctttagctataggttgctgtcatcatcctattttattttagctgtcttt |
39592720 |
T |
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