View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17256_low_5 (Length: 407)

Name: NF17256_low_5
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17256_low_5
NF17256_low_5
[»] chr4 (6 HSPs)
chr4 (12-391)||(40288718-40289106)
chr4 (16-158)||(45612234-45612385)
chr4 (12-170)||(54305828-54305997)
chr4 (63-170)||(55680950-55681058)
chr4 (60-170)||(3420062-3420172)
chr4 (73-119)||(29987949-29987995)
[»] chr7 (7 HSPs)
chr7 (12-170)||(44572315-44572469)
chr7 (59-170)||(22291075-22291186)
chr7 (16-129)||(45215847-45215969)
chr7 (12-62)||(37338667-37338717)
chr7 (60-155)||(11820336-11820432)
chr7 (16-54)||(27616528-27616566)
chr7 (131-171)||(27616663-27616703)
[»] chr6 (7 HSPs)
chr6 (60-170)||(34013748-34013858)
chr6 (12-170)||(19294539-19294706)
chr6 (60-170)||(34010992-34011102)
chr6 (60-167)||(14494226-14494334)
chr6 (60-170)||(12844171-12844281)
chr6 (16-170)||(17540231-17540391)
chr6 (73-170)||(31414691-31414786)
[»] chr2 (4 HSPs)
chr2 (60-170)||(26576330-26576440)
chr2 (60-169)||(9929919-9930028)
chr2 (60-173)||(34409364-34409477)
chr2 (12-138)||(32200658-32200794)
[»] chr8 (4 HSPs)
chr8 (60-175)||(37855277-37855391)
chr8 (60-138)||(15131782-15131861)
chr8 (60-119)||(28421308-28421367)
chr8 (111-179)||(18393340-18393408)
[»] chr1 (2 HSPs)
chr1 (67-169)||(32741120-32741220)
chr1 (12-62)||(23432080-23432130)
[»] chr3 (5 HSPs)
chr3 (16-62)||(26565514-26565560)
chr3 (16-62)||(21408754-21408800)
chr3 (60-107)||(17715691-17715737)
chr3 (60-107)||(19016920-19016966)
chr3 (12-62)||(10516069-10516119)
[»] chr5 (1 HSPs)
chr5 (16-62)||(40838115-40838161)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 40289106 - 40288718
Alignment:
Q  12 agagaaaaaatgttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaag 102  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||         |||||||||||||||||||||||||||| || ||||||||    
T  40289106 agagaaaaaatgttttagatatttgtttgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaag 40289007  T
Q  103 aaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacaccaacacatgttagatacggtaacacgcctagtt 202  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||| ||||||||    
T  40289006 aaaaacacaattatttagaacaccggttcgacacgtatcgtacgagtgttataggaatgtcggacaccaacatatattggatacggtaacatgcctagtt 40288907  T
Q  203 ctagagatgcatgtgctttatagataatgacacaatcctcccatgatattaagctctctacagtttcgatcaaaaattctctctgaatctaacagtctct 302  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  40288906 ctagaggtgcatgtgctttatagatcatgacacaatcctcccatgatgttaagctctccacagtttccatcaaaaattctctctgaatctaacagtctct 40288807  T
Q  303 aaggttacagcattaaacagccctagagaatccaatttcaaaactatttagtaggccattcgcattggtaggcgtcgttaggatgactc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40288806 aaggttacagcattaaacagccctagagaatccaatttcaaaactatttagtaggccattagcattggtaggcgtcgttaggatgactc 40288718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 45612385 - 45612234
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaa 106  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||         | |||||||||||| ||||||||||||| || | ||||||||||    
T  45612385 aaaaattgttttagatatttgtttgagttgtccgacacgactcgtatgagtgttatacaggtgtcggacatcgatcgtaggagtgtcgacgtaaagaaaa 45612286  T
Q  107 acgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcatagga 158  Q
    |  ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  45612285 aaacaattatttaggacaccggtttgacacgtgtcgtacgggtgtcatagga 45612234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 54305828 - 54305997
Alignment:
Q  12 agagaaaaaat-gttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaa 101  Q
    ||||||||||| ||||||||||||||| |||||| || |||||| |||||||         |||||||| |||||||||| |||||||| || |||||||    
T  54305828 agagaaaaaattgttttagatatttgtgtgagttgtctgacacggctcgtatgagtgttgtataggtgttggacaccgattgtaggagtgtcgaagtaaa 54305927  T
Q  102 ga-aaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacacc 170  Q
    || ||||  ||||||||||| ||| ||||| ||||||| ||||||| ||||||||||| |||||||||||    
T  54305928 gacaaaaaacaattatttaggacatcggttcgacacgtgtcgtacgggtgtcataggagtgtcggacacc 54305997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 55680950 - 55681058
Alignment:
Q  63 ataggtgtcggacaccgatcgtaggagtttcaaagtaaag-aaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatg 161  Q
    |||||||||||||||||||||||||||| || |||||||| |||||  ||||||||||| ||| ||||| |||| || |||||| |||||||||||| ||    
T  55680950 ataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaaaaacaattatttaggacagcggttcgacatgtgtcgtacaagtgtcataggagtg 55681049  T
Q  162 tcggacacc 170  Q
    |||||||||    
T  55681050 tcggacacc 55681058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 3420062 - 3420172
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||| || ||| |||||||||||||||||| || |||||||||||||  ||||||||||| |||||| || ||||||| |||||||| ||||||| ||     
T  3420062 tatatgggagtcagacaccgatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccgattcgacacgtgtcgtacgattgtcataagag 3420161  T
Q  160 tgtcggacacc 170  Q
    |||| ||||||    
T  3420162 tgtcagacacc 3420172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 29987949 - 29987995
Alignment:
Q  73 gacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattattta 119  Q
    |||||||||||||||||| || |||||||||||||  ||||||||||    
T  29987949 gacaccgatcgtaggagtgtcgaagtaaagaaaaaaacaattattta 29987995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 44572469 - 44572315
Alignment:
Q  12 agagaaaaaat-gttttagatatttgtctgagttatccgacacgactcgtatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgc 110  Q
    ||||||||||| |||||||||||||||||||||| ||||||| | ||     |||||||||| ||||||||||||||||| || |||||||||||||       
T  44572469 agagaaaaaattgttttagatatttgtctgagttgtccgacatggct-----ataggtgtcgaacaccgatcgtaggagtgtcgaagtaaagaaaaaaat 44572375  T
Q  111 aattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacacc 170  Q
    || ||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  44572374 aagtatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacacc 44572315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 22291075 - 22291186
Alignment:
Q  59 gtatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcatagga 158  Q
    ||||||| |||||||| ||||||||||||||| || |||||||||||||  ||||||||||| |||||||||  |||||| | ||||| |||||||||||    
T  22291075 gtatatacgtgtcggataccgatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcaacacgtgtggtacgggtgtcatagga 22291174  T
Q  159 atgtcggacacc 170  Q
     |||||||||||    
T  22291175 gtgtcggacacc 22291186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 45215969 - 45215847
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaa 106  Q
    ||||| ||||||||||||||| ||| ||| ||||||||| |||||||         ||||||||||||||||||||||||||||  | ||||||||||||    
T  45215969 aaaaattgttttagatatttgactgggttgtccgacacggctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgacgaagtaaagaaaa 45215870  T
Q  107 acgcaattatttagaacaccggt 129  Q
    |  ||||||||||| ||||||||    
T  45215869 aaacaattatttaggacaccggt 45215847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 37338717 - 37338667
Alignment:
Q  12 agagaaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    ||||||||||||||| ||||||||||||||||| || | ||||||||||||    
T  37338717 agagaaaaaatgtttcagatatttgtctgagttgtctgtcacgactcgtat 37338667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 11820432 - 11820336
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaa-ttatttagaacaccggtttgacacgtatcgtacgagtgtcata 155  Q
    ||||||| |||| |||||||||| || ||||  |||||||||||| ||   || |||||||||||||  || |||||||| ||||||||||||||||    
T  11820432 tatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtgtcata 11820336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 27616528 - 27616566
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacg 54  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  27616528 aaaaaatgtttcagatatttgtctgagttgtccgacacg 27616566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 27616663 - 27616703
Alignment:
Q  131 tgacacgtatcgtacgagtgtcataggaatgtcggacacca 171  Q
    |||||||| |||||||||||||||| || ||||||||||||    
T  27616663 tgacacgtgtcgtacgagtgtcatatgagtgtcggacacca 27616703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 34013748 - 34013858
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||  ||||||||||| ||||||||| ||||||| |||||| |||||||| |||     
T  34013748 tatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcgacacgtgtcgtacaagtgtcattggag 34013847  T
Q  160 tgtcggacacc 170  Q
    |||||||||||    
T  34013848 tgtcggacacc 34013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 19294539 - 19294706
Alignment:
Q  12 agagaaaaaatgttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaag 102  Q
    ||||||||| |||||||||||||||| ||| || ||||||||| |||||||         | ||||||||||||||||||||| |||| || ||||||||    
T  19294539 agagaaaaattgttttagatatttgtgtgacttgtccgacacggctcgtatgagtgttatacaggtgtcggacaccgatcgtaagagtgtcgaagtaaag 19294638  T
Q  103 aaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacacc 170  Q
    |||||  ||||||||| | ||||||||| ||||||| ||||||| |||||| |||| |||||||||||    
T  19294639 aaaaaaacaattattttggacaccggttcgacacgtgtcgtacgggtgtcacaggagtgtcggacacc 19294706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 34011102 - 34010992
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||  ||||||||||| ||||||||| ||||||| ||| || |||||||| |||     
T  34011102 tatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcgacacgtgtcgcacaagtgtcattggag 34011003  T
Q  160 tgtcggacacc 170  Q
    |||||||||||    
T  34011002 tgtcggacacc 34010992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 14494334 - 14494226
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaaga-aaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcatagga 158  Q
    |||||||||||||||||||||| |||||||| || ||||||||| ||||  ||||||||||  |||| |||| ||||||| ||||||| |||||||||||    
T  14494334 tatataggtgtcggacaccgattgtaggagtgtcgaagtaaagaaaaaaaacaattatttaagacactggttcgacacgtgtcgtacgggtgtcatagga 14494235  T
Q  159 atgtcggac 167  Q
     ||||||||    
T  14494234 gtgtcggac 14494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 12844171 - 12844281
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    |||||| ||||| |||| ||||| ||||||| || |||||||||||||  ||||||||||| ||||||||| ||||||| ||||||  |||| ||||||     
T  12844171 tatataagtgtcagacatcgatcttaggagtgtcgaagtaaagaaaaaaccaattatttaggacaccggttcgacacgtgtcgtacaggtgttataggag 12844270  T
Q  160 tgtcggacacc 170  Q
    |||||||||||    
T  12844271 tgtcggacacc 12844281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 17540231 - 17540391
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaa 106  Q
    ||||| ||||||||||||||||||||||| |||||||||  || |||         ||||||||| || |||||||| |||||  |||||||||||||||    
T  17540231 aaaaattgttttagatatttgtctgagttgtccgacacggttcatatgagtgttatataggtgtcagataccgatcgaaggagagtcaaagtaaagaaaa 17540330  T
Q  107 acgcaattatttagaacaccggtttgacacgtatcgtacg-agtgtcataggaatgtcggacacc 170  Q
    ||   ||||||| | ||||||||| ||| ||| | |||||  ||||||||||| |||||||||||    
T  17540331 ac---attattt-ggacaccggttcgactcgtgttgtacgcggtgtcataggagtgtcggacacc 17540391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 31414691 - 31414786
Alignment:
Q  73 gacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacacc 170  Q
    |||||||||||||||||| | || |||||||||||  ||||||||||| ||| | ||||||||| |   |||||||||| |||||| | |||||||||    
T  31414691 gacaccgatcgtaggagtgtgaa-gtaaagaaaaaa-caattatttaggacatcagtttgacacatggtgtacgagtgtgataggagtatcggacacc 31414786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 26576330 - 26576440
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||  ||||||||||  ||||||||| ||||||| ||||||| |||||||||||     
T  26576330 tatataggtgttggagaccgatcgtaggagtgtcaaagtaaagaaaaaatcaattatttaagacaccggttcgacacgtgtcgtacgggtgtcataggag 26576429  T
Q  160 tgtcggacacc 170  Q
    |||||||||||    
T  26576430 tgtcggacacc 26576440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 9929919 - 9930028
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||||||||||||||||||||||||||| | |  |||||||||||||  |||| |||||| |||||| |||||||||| |||||||||||||||||||     
T  9929919 tatataggtgtcggacaccgatcgtaggaatcttgaagtaaagaaaaaaacaatcatttaggacaccgttttgacacgtttcgtacgagtgtcataggag 9930018  T
Q  160 tgtcggacac 169  Q
    ||||||||||    
T  9930019 tgtcggacac 9930028  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 34409477 - 34409364
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    ||||||||||||||||||||||| |||| || || |||||||||||||  ||||||||||| ||||||||||||||||| ||||||| || ||||||||     
T  34409477 tatataggtgtcggacaccgatcataggcgtgtcgaagtaaagaaaaaaacaattatttaggacaccggtttgacacgtgtcgtacgggtatcataggag 34409378  T
Q  160 tgtcggacaccaac 173  Q
    ||||||||| ||||    
T  34409377 tgtcggacatcaac 34409364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 32200794 - 32200658
Alignment:
Q  12 agagaaaaaat-gttttagatatttgtctgagttatccgacacgactcgtat---------ataggtgtcggacaccgatcgtaggagtttcaaagtaaa 101  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||| |||||||         |||||||| || |||||||||||||||| || |||||||    
T  32200794 agagaaaaaattgttttagatatttttctgagttgtccgacacggctcgtatgactgttatataggtgttgggcaccgatcgtaggagtgtcgaagtaaa 32200695  T
Q  102 gaaaaacgcaattatttagaacaccggtttgacacgt 138  Q
    ||||||  ||||||||||| ||||| ||| |||||||    
T  32200694 gaaaaaatcaattatttaggacaccagttcgacacgt 32200658  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 37855277 - 37855391
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaa 159  Q
    |||||||||||||| |||| ||||||||||| |  |||||||||||||  ||||||||||| ||| ||||||||||||| ||| |||| ||||||||||     
T  37855277 tatataggtgtcggtcaccaatcgtaggagtgttgaagtaaagaaaaaa-caattatttaggacaacggtttgacacgtgtcgcacgaatgtcataggag 37855375  T
Q  160 tgtcggacaccaacac 175  Q
    ||||| ||||| ||||    
T  37855376 tgtcgaacaccgacac 37855391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 15131861 - 15131782
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaaga-aaaacgcaattatttagaacaccggtttgacacgt 138  Q
    |||||||||||||||||||| |||||||||| || ||||||||| ||||  |||||||| || ||||||||| |||||||    
T  15131861 tatataggtgtcggacaccggtcgtaggagtgtcgaagtaaagaaaaaaaacaattattcaggacaccggttcgacacgt 15131782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 28421308 - 28421367
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattattta 119  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||  ||||||||||    
T  28421308 tatataggtgtcggacaccgatcgtaggaatgtcgaagtaaagaaaaaatcaattattta 28421367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 18393408 - 18393340
Alignment:
Q  111 aattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcggacaccaacacatgt 179  Q
    |||||||||| ||||  ||| ||||||| ||||||||||||||||||| ||||| ||||| ||||||||    
T  18393408 aattatttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcgaacacctacacatgt 18393340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 32741120 - 32741220
Alignment:
Q  67 gtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaacgcaattatttagaacaccggtttgacacgtatcgtacgagtgtcataggaatgtcgga 166  Q
    |||||||||||||||||||||||| || ||||||| || |||  |||||||||| || | |||| ||||||| ||||||||||||||||||| |||| ||    
T  32741120 gtgtcggacaccgatcgtaggagtgtcgaagtaaaaaataac--aattatttaggacgctggttcgacacgtgtcgtacgagtgtcataggagtgtcaga 32741217  T
Q  167 cac 169  Q
    |||    
T  32741218 cac 32741220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 23432080 - 23432130
Alignment:
Q  12 agagaaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    |||||||||||||| ||||||||| |||||||| ||||||||| |||||||    
T  23432080 agagaaaaaatgttctagatatttatctgagttgtccgacacggctcgtat 23432130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 26565514 - 26565560
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  26565514 aaaaaatgttttagatatttgtctgagttgtccgacacggctcgtat 26565560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 21408800 - 21408754
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||||    
T  21408800 aaaaaatgttttagatatttgtttgagttgtccgacacggctcgtat 21408754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 17715737 - 17715691
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaa 107  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||    
T  17715737 tatataggtgtcagacaccgatc-taggagtgtcaaagtaaagaaaaa 17715691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 19016966 - 19016920
Alignment:
Q  60 tatataggtgtcggacaccgatcgtaggagtttcaaagtaaagaaaaa 107  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||    
T  19016966 tatataggtgtcagacaccgatc-taggagtgtcaaagtaaagaaaaa 19016920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 10516119 - 10516069
Alignment:
Q  12 agagaaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    ||||||||||| |||||||||||||  |||||| || ||||||||||||||    
T  10516119 agagaaaaaatattttagatatttgcatgagttgtctgacacgactcgtat 10516069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 40838115 - 40838161
Alignment:
Q  16 aaaaaatgttttagatatttgtctgagttatccgacacgactcgtat 62  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  40838115 aaaaaatgttttagacatttgtctgagttgtccgacacgacttgtat 40838161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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