View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_6 (Length: 392)
Name: NF17256_low_6
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 90 - 365
Target Start/End: Original strand, 47107920 - 47108192
Alignment:
| Q |
90 |
ttaaaaatcatattcttgaatgtcaatcttgttgcattgaataattgttcctaaaaatcattcatatatactatagtaggagcttaaacaaa-taacacg |
188 |
Q |
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| T |
47107920 |
ttaaaaatcatattcttgaatgttaatcttgttgcattcaatatttgt-cctaaaaaccattcatatatactatagtaggagcttaaacaaaataacacg |
47108018 |
T |
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| Q |
189 |
ctaaacatt--aaaatcacaatgcaacatgattgatgcaagagatatgatatatgatatgatcttcaaggtgcatattgcatagtcgttaaatattaatt |
286 |
Q |
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| T |
47108019 |
ctaaatatataaaaatcacaatgcaacatggttgatgcaagagatat-------gatatgatcttcaaggtgcatattgcatagtcgttaaatattaatt |
47108111 |
T |
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| Q |
287 |
cacacaaataac--aaaattctagtcaaataaataaactatgttcaaaattgcatatcttaaggatcaaataacaacaata |
365 |
Q |
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| T |
47108112 |
cacacaaataacataaaattctagtcaaataaataaactatgttcaaaattgcatatcttaaggatcaaataacaccaata |
47108192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 47107810 - 47107908
Alignment:
| Q |
6 |
ttgaatcatagatcataaataagtactataatctaacatgtnnnnnnnnccctcatattagttattagcataaaataacatttcttaaaaatcatattct |
105 |
Q |
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| T |
47107810 |
ttgaatcatagatcataaataagtactataatctaacatgcaaaaaat--cctcatattagtttttagcataaaataacatttcttaaaaatcatattct |
47107907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 211 - 369
Target Start/End: Complemental strand, 36970052 - 36969894
Alignment:
| Q |
211 |
aacatgattgatgcaagagatatgatatatgatatgatcttcaaggtgcatattgcatagtcgttaaatattaattcacacaaataacaaaattctagtc |
310 |
Q |
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| T |
36970052 |
aacatgattgatgcaagagatatgatatatgatatgatcttcaaggtgcatattgcatagtcgttaaatattaattcacacaaataacaaaattctagtt |
36969953 |
T |
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| Q |
311 |
aaataaataaactatgttcaaaattgcatatcttaaggatcaaataacaacaatatatt |
369 |
Q |
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| T |
36969952 |
aaataaataaactatgttcaaaattgcatatcttaatgatcaaataacaacaatatatt |
36969894 |
T |
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