View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_7 (Length: 345)
Name: NF17256_low_7
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 39593079 - 39592735
Alignment:
| Q |
7 |
tcgaagaatataaaaatagttgtttcatatttatttatggaaattcctaatatggaatgaaagaaaaccaattataaatatgacaaaagattaagaagtt |
106 |
Q |
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| T |
39593079 |
tcgaacaatataaaaatagttgtttcatatttatttatggaaattcctaatatggaatgaaagaaaaccaattataaatatgacaaaagattaagaagtt |
39592980 |
T |
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| Q |
107 |
gcccaaaatattaggagagtatgtcttaatcttatcacatgacttaaggaaaaagtatccatccgtcacctttgttttgggtcaaatatagagattccag |
206 |
Q |
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| T |
39592979 |
gcccaaaatattaggagagtatgtcttaatcttatcacatcacttaaggaaaaagtatccatccgtcacctttgttttgggtcaaatatagagattccag |
39592880 |
T |
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| Q |
207 |
taattaaacggcttgatgaaagatccac------gatatatcaccaacttcaaggggtttagaccaaaatacactctcaacaaatcaaaccaattaatgc |
300 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39592879 |
taattaaacggcttgatgaaagacccacagtacaaatatatcaccaacttcaaggggtttagaccaaaatacactctcaacaaatcaaaccaattaatgc |
39592780 |
T |
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| Q |
301 |
acaagagaagttctgggaactattaaagctataccaaatccagca |
345 |
Q |
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| T |
39592779 |
acaagagaagttctgggaactattaaagctataccaaacccagca |
39592735 |
T |
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