View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_8 (Length: 343)
Name: NF17256_low_8
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 17030386 - 17030255
Alignment:
| Q |
43 |
atttttgttttacctacagatgcttgccgtaggtacagagcctactgagacctgataaatagttttacctacgaccgtataagtaaccggaaataatatg |
142 |
Q |
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| T |
17030386 |
attttagttttacctacggatttttgccataagcacagagcctagcgtggactaataaattgttttaactacggccgtattagtaattggtcataatatg |
17030287 |
T |
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| Q |
143 |
ctttatctgaaactttttcttatcatattttt |
174 |
Q |
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| T |
17030286 |
ctttatatgcaactttttcttatcatattttt |
17030255 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 17030070 - 17030032
Alignment:
| Q |
174 |
tacaataaattaaataaatgaacttatgaaacaataaaa |
212 |
Q |
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| T |
17030070 |
tacaataaattaaataaatgaacttatgaaacaataaaa |
17030032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 4858795 - 4858741
Alignment:
| Q |
174 |
tacaataaattaaataaatgaacttatgaaacaataaaattaaccttcaattata |
228 |
Q |
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| T |
4858795 |
tacaataaattaaataaaataatttatgaaacaataaaataaaacttctattata |
4858741 |
T |
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