View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17256_low_9 (Length: 340)
Name: NF17256_low_9
Description: NF17256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17256_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 42741490 - 42741182
Alignment:
| Q |
13 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
112 |
Q |
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| T |
42741490 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
42741391 |
T |
|
| Q |
113 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatattcaatattacttacctatatttaagcactgtaacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42741390 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacccatattcaatattacttacctatatttaagcactgtaacg |
42741291 |
T |
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| Q |
213 |
ttaaaaattccttcaaataaaaatatatatgccgttaataaaaatcttttatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
312 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741290 |
ttaaaaattccttcaaataaaa----atatgccgttaataaaaatcttcaatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
42741195 |
T |
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| Q |
313 |
agcataataattg |
325 |
Q |
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||||||||||||| |
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| T |
42741194 |
agcataataattg |
42741182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 21745610 - 21745322
Alignment:
| Q |
13 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745610 |
tgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacataagatt |
21745511 |
T |
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| Q |
113 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatattcaatattacttacctatatttaagcactgtaacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21745510 |
atagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttaccta--------------------tatttaagcactgtaacg |
21745431 |
T |
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| Q |
213 |
ttaaaaattccttcaaataaaaatatatatgccgttaataaaaatcttttatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
312 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745430 |
ttaaaaattccttcaaataaaa----atatgccgttaataaaaatcttctatactgatctataaaggaaatacaacattttggtaggattttacttctgc |
21745335 |
T |
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