View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_high_18 (Length: 251)
Name: NF17257_high_18
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39745731 - 39745975
Alignment:
| Q |
1 |
atttgtttaaatcattatattcatttactaatatatg----tataatatcatcccaattaatttacagggctgtatagatacagagttggtgatgtactt |
96 |
Q |
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| T |
39745731 |
atttgtttaaatcattatattcatttactaatatatgtatgtataatatcatcccaattaatttacagggctgtatagatacagagttggtgatgtactt |
39745830 |
T |
|
| Q |
97 |
caagtggttgctttccacaacaaagccccacaatttcgattcatatgtagaagaaacgtagtaataagcattgacagtgaaaagacaaatgaagaggatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39745831 |
caagtggttgctttccacaacaaagccccacaatttcgattcatatgtagaagaaacgtagtaataagcattgacagtgaaaagacaaatgaagaggatt |
39745930 |
T |
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| Q |
197 |
tacatagaagtgcgacaatggccaaaaagttattagaaccctatg |
241 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
39745931 |
tacatagaagtgtgacaatgtccaaaaagttattagaaccctatg |
39745975 |
T |
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