View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17257_high_20 (Length: 219)
Name: NF17257_high_20
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 39745493 - 39745303
Alignment:
| Q |
10 |
agcaaaggtagtgatgactagctcataaaagcaaccaatcttgacattcactaaatccacaagcttatcattaggaacttgttcattttcatcaaaatcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39745493 |
agcaaaggtagtgatgactagctcataaaagcaaccaatcttgacattcactaaatccacaagcttatcattaggaacttgttcattttcatcaaaatcc |
39745394 |
T |
|
| Q |
110 |
atcaacagtgtcccattatgtccaagaggaatgaattcaaagtagcccatattaggcaacagtgtaaaagcaacatcatcagggtcactca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39745393 |
atcaacagtgtcccattatgtccaagaggaatgaattcaaagtagcccatattaggcaacagtgtaaaagcaacatcatcagggtcactca |
39745303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University