View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_high_4 (Length: 607)
Name: NF17257_high_4
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 43882894 - 43882304
Alignment:
| Q |
1 |
tacagcataaatcgagagaatttcattttaacatgcatatacctgatgatttctttgaggggtcctttgctacagctgtggtagatgagattcggccaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882894 |
tacagcataaatcgagagaatttcattttaacttgcatatacctgatgatttctttgaggggtcctttgctacagctgtggtagatgagattcggccaaa |
43882795 |
T |
|
| Q |
101 |
tttccttaccgcttgaacagttctggatattactttggacctgcaaaacacagatcaaaattttaaccataaatatcacatatacattaattttagactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882794 |
tttccttaccgcttgaacagttctggatattactttggacctgcaaaacacagatcaaaattttaaccataaatatcacatatacattaattttagactt |
43882695 |
T |
|
| Q |
201 |
gacttctaagcgatgcatatgttgttcctctgcaaatatgctgtaatagcataagcactactcacgtctttgacttatctgaagtctttttggcttcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43882694 |
gacttctaagcgatgcatatgttgttcctctgcaaatatgctgtaatagcataagcactactcacgtcttcgacttatctgaagtctttttggcttcact |
43882595 |
T |
|
| Q |
301 |
catactggaactatcagaagaaccatcagtttctgtgccgagagcaatactattgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgag |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43882594 |
catactggaactatcagaagaaccatcagtttctgtgccgagagcaagactattgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgag |
43882495 |
T |
|
| Q |
401 |
actccttgagttactcgcctagccttttcaggcgaatggagaaactcagttttatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaa |
500 |
Q |
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| T |
43882494 |
actccttgagttactcgcctagccttttcaggcgaatggagaaactcagttttatggtcatccattcgttgtttggtatcaccttcaacaaggtgcttaa |
43882395 |
T |
|
| Q |
501 |
aacttccacttgatacttttcgaatttgcttagaaataccactgacggacttgttcagtgatttaagccgagactccttgttgtcagaaaa |
591 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43882394 |
aacttccacttgatactttttgaatttgcttagaaataccactgacggacttgttcaatgatttaagccgagactccttgttgtcagaaaa |
43882304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 353 - 591
Target Start/End: Complemental strand, 43882092 - 43881854
Alignment:
| Q |
353 |
ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt |
452 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
43882092 |
ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaacggaaatactcagttt |
43881993 |
T |
|
| Q |
453 |
tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatacttttcgaatttgcttagaaataccactgacggactt |
552 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43881992 |
tatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaataccactgacggactt |
43881893 |
T |
|
| Q |
553 |
gttcagtgatttaagccgagactccttgttgtcagaaaa |
591 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43881892 |
gttcagtgatttaagccgagactccttgttgtcagaaaa |
43881854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 353 - 591
Target Start/End: Complemental strand, 43882317 - 43882079
Alignment:
| Q |
353 |
ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt |
452 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| |
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| T |
43882317 |
ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagctttttcaggcgaacggagaaactcagttt |
43882218 |
T |
|
| Q |
453 |
tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatacttttcgaatttgcttagaaataccactgacggactt |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
43882217 |
tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgtgcttagaaataccactaacggactt |
43882118 |
T |
|
| Q |
553 |
gttcagtgatttaagccgagactccttgttgtcagaaaa |
591 |
Q |
| |
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| T |
43882117 |
gttcagtgatttaagccgagactccttgttgtcagaaaa |
43882079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 353 - 569
Target Start/End: Complemental strand, 43881867 - 43881651
Alignment:
| Q |
353 |
ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt |
452 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
43881867 |
ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaacggagatactcagttt |
43881768 |
T |
|
| Q |
453 |
tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatacttttcgaatttgcttagaaataccactgacggactt |
552 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |
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| T |
43881767 |
tatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaataccaccaatggatgc |
43881668 |
T |
|
| Q |
553 |
gttcagtgatttaagcc |
569 |
Q |
| |
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||||||||||||||||| |
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|
| T |
43881667 |
gttcagtgatttaagcc |
43881651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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