View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17257_low_1 (Length: 763)
Name: NF17257_low_1
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 52548365 - 52548563
Alignment:
| Q |
19 |
gtgcatctccatatttaaccgttgccgcatttctggtgtcataatttgcaaggaaggcagcacaagcaccattatttgtcttaaattcatgcacctaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52548365 |
gtgcatctccatatttaaccgttgccgcatttctggtgtcataatttgcaaggaaggcagcacaaacaccattatttgtcttaaattcatgcacctaaga |
52548464 |
T |
|
| Q |
119 |
taacattaacaaaagtaaacaagtaaatttacaatacaaaatcctattgtgttgggtattctcataaaattagttgatatgatatttacctcaagattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52548465 |
taacattaacaaaagtaaacaagtaaatttacaatacaaaatcctattgtgttgggtattctcataaaattagttgatatgatatttacctctagattt |
52548563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 569 - 756
Target Start/End: Original strand, 52548586 - 52548787
Alignment:
| Q |
569 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa--------------catacaataagctaacatagagctcaatatg |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52548586 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaatctaatgtaggttacatacaataagctaacatagagctcaatatg |
52548685 |
T |
|
| Q |
655 |
cgtatataagtatcttatactcttctaattcaggaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcttct |
754 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52548686 |
cgtatataagtatcttatactcttctaattcagtaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcttct |
52548785 |
T |
|
| Q |
755 |
ca |
756 |
Q |
| |
|
|| |
|
|
| T |
52548786 |
ca |
52548787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 26619328 - 26619274
Alignment:
| Q |
569 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa |
623 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
26619328 |
gttagaaatgattacttaatcattgcatagctttgagtttgttatgtgttagcaa |
26619274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 17126923 - 17126794
Alignment:
| Q |
203 |
tttacctcaagattttttccaggccatgttactatgggatcaacagacaataaagctggttcacatagcttaattgccttatgtaattcattcaaatgcc |
302 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | ||||||||||||| |||||||| || ||| |||| ||||| |||||||| || | | ||||| |
|
|
| T |
17126923 |
tttacctcaaggttttttccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttagatgcc |
17126824 |
T |
|
| Q |
303 |
cccaatttggctggtttaaaagtcctgata |
332 |
Q |
| |
|
|||| ||||| | ||| ||||||||||| |
|
|
| T |
17126823 |
cccattttggttcacttataagtcctgata |
17126794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University