View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17257_low_10 (Length: 421)
Name: NF17257_low_10
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 40104415 - 40104803
Alignment:
| Q |
14 |
caaaggccaatgatacctatgttgacatagcgaaaattctcagtatcattaatttgtaacaaaatttcggtgaattggattcagagactcactaagacta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40104415 |
caaaggccaatgatacctatgttgacatagcgaaaattctcagtatcattaatttgtaacaaaatttcggtgaattggattcagagactcactaagacta |
40104514 |
T |
|
| Q |
114 |
aaagatgtagccccaaaatggaaaacatattgtctttgacaaaaagtgtgttagacacacactaacacgatcctgatacatgcaagttatattcgatcac |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40104515 |
aaagatgtagccccaaaagggaaaacatattgtctttgacaaaaagtgtgttagacacacactaacacgatcccgatacatgcaagttatattcgatcac |
40104614 |
T |
|
| Q |
214 |
tttcattttctctccggtgaaaaagaattcgaagtctcaagagttagatcatgctcccacaaacaatcccacagctctcaccacacaagtagaagctgct |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40104615 |
tttcattttctctccggtcaaaaagaattcgaagtctcaagagttagatcatgctcccacaaacaatcccacagctctcaccacacaagtagaagctgct |
40104714 |
T |
|
| Q |
314 |
acaatcaacgcagcaaagattggtggaacaattagatcaagcttagacttcacaaacaaatgagaaggaaaacatagaatctctccagg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40104715 |
acaatcaacgcagcaaagattggtggaacaattagatcaagcttagacttcacaaacaaatgagaaggaaaacatagaatctctccagg |
40104803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University