View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_11 (Length: 417)
Name: NF17257_low_11
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_11 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 51859455 - 51859067
Alignment:
| Q |
12 |
atgaatagcagaccaaaaactccactaattaacttgtacaagcatctttacaaaaatagagaaggatgcagattggcaaagcagcacagcgaccaacaga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51859455 |
atgagtagcagaccaaaaactccactaattaacttgtacaagcatctttacaaaaatagagaaggatgcagattggcaaagcagcacagcgaccaacaga |
51859356 |
T |
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| Q |
112 |
ggaagagtatcagattacaaaaccaaacaaaagaccgacagtaggtttggctcggctctcttatgatcttattgaagagagaggagctaaatttaatagt |
211 |
Q |
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| T |
51859355 |
ggaagagtatcagattacaaaaccaaacaaaagaccgacagtaggtttggctcggctctcttatgatcttattgaagagagaggagctaaatttaatagt |
51859256 |
T |
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| Q |
212 |
ttatcatatgttgtaaaactggatgcaaatgtaataaatcctaatgaaacaatatatcggctgtattcttaaattactcacatcacatgtaaatgagaaa |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51859255 |
ttatcatattttgtaaaactggatgcaaatgtaataaatcctaatgaaacaatatatcggctgtattcttaaattactcacatcacatgtaaatgagaaa |
51859156 |
T |
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| Q |
312 |
actagtaaaaactgcaagattcaaacaattagtaggaaataccagaagaggatatttcggaacctagagaattaataactgcaaggtct |
400 |
Q |
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| T |
51859155 |
actagtaaaaactgcaagatacaaacaattagtaggaaataccagaagaggatatttcggaacctagagaattaataactgcaaggtct |
51859067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 62 - 268
Target Start/End: Complemental strand, 51855965 - 51855765
Alignment:
| Q |
62 |
caaaaatagagaaggatgcagattggcaaagcagcacagcgaccaacagaggaagagtatcagattacaaaaccaaacaaaagaccgacagtaggtttgg |
161 |
Q |
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|||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
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| T |
51855965 |
caaaaatagacaaggatgcagattggcaaagcaccacagcaa------gaggaagagtatcagatgacaaaaccaaaccaaagaccgacagtaggcttgg |
51855872 |
T |
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| Q |
162 |
ctcggctctcttatgatcttattgaagagagaggagctaaatttaatagtttatcatatgttgtaaaactggatgcaaatgtaataaatcctaatgaaac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51855871 |
ctcggctctcttatgatcttattgaagagagaggagctaaatttaatagtttatcataaattgtaaaactggatgcaaatgtaataaatcctaatgaaaa |
51855772 |
T |
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| Q |
262 |
aatatat |
268 |
Q |
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||||||| |
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| T |
51855771 |
aatatat |
51855765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 3416 - 3160
Alignment:
| Q |
12 |
atgaatagcagaccaaaaactccactaattaacttgtacaagcatctttacaaaaatagagaaggatgcagattggcaaagcagcacagcgaccaacaga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416 |
atgagtagcagaccaaaaactccactaattaacttgtacaagcatctttacaaaaatagagaaggatgcagattggcaaagcagcacagcgaccaacaga |
3317 |
T |
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| Q |
112 |
ggaagagtatcagattacaaaaccaaacaaaagaccgacagtaggtttggctcggctctcttatgatcttattgaagagagaggagctaaatttaatagt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316 |
ggaagagtatcagattacaaaaccaaacaaaagaccgacagtaggtttggctcggctctcttatgatcttattgaagagagaggagctaaatttaatagt |
3217 |
T |
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| Q |
212 |
ttatcatatgttgtaaaactggatgcaaatgtaataaatcctaatgaaacaatatat |
268 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3216 |
ttatcatattttgtaaaactggatgcaaatgtaataaatcctaatgaaaaaatatat |
3160 |
T |
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