View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_13 (Length: 361)
Name: NF17257_low_13
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 37961621 - 37961289
Alignment:
| Q |
11 |
cacagacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961621 |
cacaaacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
37961522 |
T |
|
| Q |
111 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961521 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
37961422 |
T |
|
| Q |
211 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37961421 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccga |
37961322 |
T |
|
| Q |
311 |
tccttacatacgttacctcgatgaagactctat |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
37961321 |
tccttacatacgttacctcgatgaagactctat |
37961289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 48 - 344
Target Start/End: Original strand, 37906481 - 37906780
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
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| T |
37906481 |
atgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacactccctctcaccttcttcgacatttcatggttttact |
37906580 |
T |
|
| Q |
148 |
gtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
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| T |
37906581 |
gtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37906680 |
T |
|
| Q |
245 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatt |
344 |
Q |
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| T |
37906681 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatt |
37906780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 343
Target Start/End: Original strand, 37914644 - 37914942
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
| |
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|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| | | || | |||||||| ||||| | |||||||| | |
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| T |
37914644 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactttctttgacatttcttggttttact |
37914743 |
T |
|
| Q |
148 |
gtca---cccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
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| | ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
37914744 |
gcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37914843 |
T |
|
| Q |
245 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctat |
343 |
Q |
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|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
37914844 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctat |
37914942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
102 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
201 |
Q |
| |
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||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
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| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
202 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
262 |
Q |
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| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
183 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
277 |
Q |
| |
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|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
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| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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