View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_14 (Length: 357)
Name: NF17257_low_14
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 48873445 - 48873161
Alignment:
| Q |
17 |
agacttaaagttcaacaaaactcgtgtcccatcatatttttgttttgataaagaaattgctgaaatgcacaataaaaaagaaaagaggtgtaatccagtg |
116 |
Q |
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| T |
48873445 |
agacttaaagttcaacaaaactcgtgtcccatcatatttttgttttgataaagaaat-gctgaaatgcacaataaaaaagaaaagaggtgtaatccagtg |
48873347 |
T |
|
| Q |
117 |
acagtgacggatcagccaatagtgatctcagattatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccattcacagcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48873346 |
acagtgacggatcagccaatagtgatctcagattatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccattgacagcat |
48873247 |
T |
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| Q |
217 |
cagccaacagggattggtacctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaag |
302 |
Q |
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| T |
48873246 |
cagccaacagggattggtacctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaag |
48873161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 48878749 - 48878465
Alignment:
| Q |
17 |
agacttaaagttcaacaaaactcgtgtcccatcatatttttgttttgataaagaaattgctgaaatgcacaataaaaaagaaaagaggtgtaatccagtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878749 |
agacttaaagttcaacaaaactcgtgtcccatcatatttttgttttgataaagaaat-gctgaaatgcacaataaaaaagaaaagaggtgtaatccagtg |
48878651 |
T |
|
| Q |
117 |
acagtgacggatcagccaatagtgatctcagattatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccattcacagcat |
216 |
Q |
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| T |
48878650 |
acagtgacggatcagccaatagtgatctcagattatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccattgacagcat |
48878551 |
T |
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| Q |
217 |
cagccaacagggattggtacctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaag |
302 |
Q |
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| T |
48878550 |
cagccaacagggattggtacctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaag |
48878465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 48856758 - 48856652
Alignment:
| Q |
148 |
attatttaaccttaccagcatagctggtcacaaacaatcatccacagcttcacattccattcacagcatcagccaacagggattggtacctgcttcaata |
247 |
Q |
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|||||| ||||||| ||||||||||| || || | |||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||| |
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| T |
48856758 |
attattaaaccttatcagcatagctgatcccata--atcatccacagcttcacattccattcactgcagcagccaacagggattgccatctgcttcaata |
48856661 |
T |
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| Q |
248 |
taaattaaa |
256 |
Q |
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|||| |||| |
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| T |
48856660 |
taaactaaa |
48856652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 48866462 - 48866420
Alignment:
| Q |
17 |
agacttaaagttcaacaaaactcgtgtcccatcatatttttgt |
59 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48866462 |
agacttaaagttcaacaaaactcacgtcccatcatatttttgt |
48866420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 48873145 - 48873114
Alignment:
| Q |
313 |
gaatcaaaatgagctttattccaattcccttc |
344 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48873145 |
gaatcaaaatgagctttattccaattcccttc |
48873114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 48878449 - 48878418
Alignment:
| Q |
313 |
gaatcaaaatgagctttattccaattcccttc |
344 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48878449 |
gaatcaaaatgagctttattccaattcccttc |
48878418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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