View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_16 (Length: 288)
Name: NF17257_low_16
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24985318 - 24985587
Alignment:
| Q |
1 |
gtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagt |
100 |
Q |
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| T |
24985318 |
gtggtgctaatattcaatggtgagtgtggtgagtgtaagtgctgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagt |
24985417 |
T |
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| Q |
101 |
taatgtgtgatggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattc |
200 |
Q |
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| T |
24985418 |
taatgtgtgatggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaatacttcaactttcactgagtatacagtggtggattc |
24985517 |
T |
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| Q |
201 |
agcttgtgctgttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtgga |
270 |
Q |
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| T |
24985518 |
agcttgtgctgttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtgga |
24985587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24993237 - 24993506
Alignment:
| Q |
1 |
gtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagt |
100 |
Q |
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|||||| || ||||||| || ||||||||||||||||| | |||| ||| |||||||||||||||||||||| | ||| ||| |||||||||||| |
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| T |
24993237 |
gtggtgatagtattcaacggggagtgtggtgagtgtaactactgcaagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagac |
24993336 |
T |
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| Q |
101 |
taatgtgtgatggaacaagtagattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattc |
200 |
Q |
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| T |
24993337 |
taatgtgtgatggtacaagtagattctctacaatagatggcaaactcatttaccatttcttgaactcttcaactttcacggagtacacagtggtcgattc |
24993436 |
T |
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| Q |
201 |
agcttgtgctgttaagctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtgga |
270 |
Q |
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|| ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
24993437 |
aggttgtgctcttaagctcaacactgaagacattcttagtctcaaaaaactcaccttgcttagttgtgga |
24993506 |
T |
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