View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17257_low_2 (Length: 689)

Name: NF17257_low_2
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17257_low_2
NF17257_low_2
[»] chr3 (1 HSPs)
chr3 (17-671)||(36413339-36413993)


Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 671
Target Start/End: Complemental strand, 36413993 - 36413339
Alignment:
Q  17 cacagatagaagatgatctttttggaccatggcctagtgcaacaaccaatgatccaacgtctaacgtgtcatcaatgcaagatcaaactttgttgcaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413993 cacagatagaagatgatctttttggaccatggcctagtgcaacaaccaatgatccaacgtctaacgtgtcatcaatgcaagatcaaactttgttgcaatt 36413894  T
Q  117 tcaacaattgtggttggaacaacaaaacaagattatagcaaagcatatgacttgaaaaaatgtaaatgtttaagcatttaaattttgtatagtagatgtt 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413893 tcaacaactgtggttggaacaacaaaacaagattatagcaaagcatatgacttgaaaaaatgtaaatgtttaagcatttaaattttgtatagtagatgtt 36413794  T
Q  217 taagcattgaaataaacnnnnnnnnnnctctccacatttttcattttcccaatttcttatgttattattgtcactttcctaattattttatgaactcttc 316  Q
    |||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  36413793 taagcattgaaataaacttttttttttctctccacatttttcattttcccaatttcttatgttattattgtcactttcatagttattttatgaactcttc 36413694  T
Q  317 caaaaaacgctcgaatctgtataataatccaatctccattacatgttttcttttatgataagttagtaa-gaccttgtatagttgttatttctaaagcta 415  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||||||||||||||||||    
T  36413693 caaaaaacgctcgaatctgtataataatctaatctccattacatgttttctttcatgataagttaataaggaccttatataattgttatttctaaagcta 36413594  T
Q  416 taataataatgcacaagtgnnnnnnnnnaacaaaataattatgcaaagttaaacaacaattttttgaaaacatcaaatcaaccaacactagtctaactat 515  Q
    |||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413593 taataataatgcacaagtgttttttttt-acaaaataattatgcaaagttaaacaacaattttttgaaaacatcaaatcaaccaacactagtctaactat 36413495  T
Q  516 agtgatcaataacaaatgatgatagagtctagcaaaataagttagtctctacaataaggcgaacaatttttctagaaaacagatgcataaatatttagtg 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  36413494 agtgatcaataacaaatgatgatagagtctagcaaaataagttagtctctacaataagacgaacaattcttctagaaaacagatgcataaatatttagtg 36413395  T
Q  616 tctggcaactctttgaacataatttttgatctgagctggatctcaagagatgatag 671  Q
    |||| |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  36413394 tctgacaactcattgaacataattcttgatctgagctgaatctcaagagatgatag 36413339  T

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