View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_5 (Length: 493)
Name: NF17257_low_5
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 224 - 483
Target Start/End: Original strand, 32679640 - 32679899
Alignment:
| Q |
224 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
32679640 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa |
32679739 |
T |
|
| Q |
324 |
atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
423 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679740 |
atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
32679839 |
T |
|
| Q |
424 |
ttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
483 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32679840 |
ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttg |
32679899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
250 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
297 |
Q |
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| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 44807075 - 44806913
Alignment:
| Q |
15 |
acaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatcaaacagaggaccagctccaaaggcataggataatgaatcattcagctcg |
114 |
Q |
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| T |
44807075 |
acaattctcacctagaagagtatggacatagtcagaatcctgtgaaacatcaaacaggggaccagctccaagggcataggatagtgagtcattcaactcg |
44806976 |
T |
|
| Q |
115 |
cccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca |
177 |
Q |
| |
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|||||||||||||||||||||||| ||||||| || |||||||||| | |||| |||||||| |
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| T |
44806975 |
cccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca |
44806913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 314 - 483
Target Start/End: Complemental strand, 44806795 - 44806627
Alignment:
| Q |
314 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
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| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
414 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
483 |
Q |
| |
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|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| |
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| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttg |
44806627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
| Q |
192 |
tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
259 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| |||||| |
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|
| T |
44806873 |
tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa |
44806806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 2230844 - 2230704
Alignment:
| Q |
15 |
acaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatcaaacagaggaccagctccaaaggcataggataatgaatcattcagctcg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |
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| T |
2230844 |
acaattctcacctagaagagtatggacatggtcagaatcctgtgaaacatcaaacagaggaccagctccaagggcataggatagtgagtcattcagctcg |
2230745 |
T |
|
| Q |
115 |
cccaagtaataaaagacctaagattaaggagcaaaacaaaa |
155 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||| |||| |
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| T |
2230744 |
cccaagtaattaaagacctaagataaaggagcgaaaaaaaa |
2230704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 261 - 427
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
261 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
360 |
Q |
| |
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|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
|
| Q |
361 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
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|
| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
| Q |
179 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa |
258 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || |||||||||| |
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|
| T |
2230655 |
gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa |
2230576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 286 - 483
Target Start/End: Original strand, 28136025 - 28136218
Alignment:
| Q |
286 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a |
384 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa |
28136119 |
T |
|
| Q |
385 |
aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
483 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || ||||||||||| |
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|
| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttg |
28136218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 28135773 - 28135930
Alignment:
| Q |
21 |
ctcacctagaagagtatggacatattcagaatcctgtgaaacatcaaacagaggaccagctccaaaggcataggataatgaatcattcagctcgcccaag |
120 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||| |
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|
| T |
28135773 |
ctcacctagaagagtatgaacatagtcagaatcctgtgacacatcaaacagaggaccagctccaagggcataggatagtgagtcattcagctcacccaag |
28135872 |
T |
|
| Q |
121 |
taataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca |
177 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||| |||| | ||||||||||||| |
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|
| T |
28135873 |
taataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca |
28135930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
| Q |
179 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
259 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||| | ||||||| | ||||||||||| |
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|
| T |
28135955 |
gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa |
28136035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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