View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_6 (Length: 482)
Name: NF17257_low_6
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Complemental strand, 33383460 - 33382997
Alignment:
| Q |
7 |
tcgaagaatatttttgaggtatttctatgaagggtaattttttctatgataatagctactttaaacaagtcatctgagcannnnnnnncaatgataatag |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
33383460 |
tcgaataatatttttgaggtatttctatgaagggtaattttttctatgataatagctactttaaactagtcatctgagcatttttttcctatgataatag |
33383361 |
T |
|
| Q |
107 |
caacttcagaacttcaagtgataacagctacctcaatgatttgatatttgaggtagtcaggtagatacttgcaacatattttttatcaccaacttccaaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383360 |
caacttcagaacttcaagtgataatagctacctcaatgatttcatatttgaggtagtcaggtagatacttgcaacatattttttatcaccaacttccaaa |
33383261 |
T |
|
| Q |
207 |
atttcatacttcttttttagagcttctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383260 |
atttcatacttcttttttagagcttctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaat |
33383161 |
T |
|
| Q |
307 |
tctattagaggtaattgtattcattccaaatgagtatttcttaagc--nnnnnnnatccttttctacttgttcatctatttcaagcactaccggatctca |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33383160 |
tctattagaggtaattgtattcattccaaatgagtatttcttaagctttttttttatctttttctacttgttcatctatttcaaacactaccggatctca |
33383061 |
T |
|
| Q |
405 |
tccttcaaaacattggcaacctttttgttgttaagaaggacaccatcttgtgttaccatctttt |
468 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
33383060 |
tccttcaaaacattggcaacctttatgttgtcaagaaggacaccatcttgtgttaccatctttt |
33382997 |
T |
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