View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17257_low_7 (Length: 472)

Name: NF17257_low_7
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17257_low_7
NF17257_low_7
[»] chr2 (6 HSPs)
chr2 (44-461)||(10203885-10204314)
chr2 (124-194)||(16717604-16717673)
chr2 (124-194)||(18227117-18227186)
chr2 (60-109)||(3882705-3882754)
chr2 (124-193)||(37617431-37617499)
chr2 (58-114)||(42924384-42924439)
[»] chr4 (5 HSPs)
chr4 (124-198)||(53737836-53737909)
chr4 (124-194)||(10575984-10576052)
chr4 (60-115)||(47560708-47560763)
chr4 (60-109)||(32692920-32692969)
chr4 (121-177)||(45984083-45984137)
[»] chr7 (2 HSPs)
chr7 (126-191)||(3256671-3256736)
chr7 (124-194)||(33887894-33887963)
[»] chr1 (2 HSPs)
chr1 (124-196)||(17112696-17112770)
chr1 (124-196)||(7750423-7750495)
[»] chr8 (2 HSPs)
chr8 (124-194)||(37167016-37167084)
chr8 (43-92)||(12954835-12954884)
[»] chr3 (2 HSPs)
chr3 (159-217)||(50604026-50604083)
chr3 (61-114)||(46188549-46188602)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 44 - 461
Target Start/End: Complemental strand, 10204314 - 10203885
Alignment:
Q  44 cattttattttatggaaaatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaaatattagtatgaaaaatgcat------------- 130  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                 
T  10204314 cattttattttatgaaaaatgttaatgagtgcctccgtaacactttttaaggaccataagtagtaaatattagtatgaaaaatgcatgtaatcaatgcat 10204215  T
Q  131 tggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtgcccttgagacaactcgttaacaaagacctttatttt 230  Q
    || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10204214 tgaaaatcgaaacatttgaatttttt-gaagaataattatttattttgtaatggttaaagagtgcccttgagacaactcgttaacaaagacctttatttt 10204116  T
Q  231 acgagtgagtagcatatatgatgtgttactccagcgtctagaattcagcttataattgaaatgcagagaaaacacacttggattccacattgctcttttc 330  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10204115 ataagtgagtagcatatatgatgtgttactccagcgtctagaattcagc-tataattgaaatgcagagaaaacacacttggattccacattgctcttttc 10204017  T
Q  331 aagtaattggtactacttctttgttaaagacacattttcgtcatcatttc-tttaagcattcaccatcgattttccttgatgttcttctgcgttagtaca 429  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10204016 aagtaattgctactacttctttgttaaagacacattttcgtcatcatttcttttaagcattcaccatcgattttccttgatgttcttctgcgttagtaca 10203917  T
Q  430 tgcaaaattagcataagaaccaactcattcat 461  Q
    ||||||||||||||||||||||||||||||||    
T  10203916 tgcaaaattagcataagaaccaactcattcat 10203885  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 16717673 - 16717604
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtg 194  Q
    ||||| ||||||||||||| |||| ||||||||  ||||||||||| |||||||  |||| ||||||||||    
T  16717673 aatgctttggaaatcaaaatattt-aatttttttaaagaataattacttattttagaatgcttaaagagtg 16717604  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 18227186 - 18227117
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtg 194  Q
    ||||||||| ||||| ||| |||||| |||| | |||||||||||| ||||||| ||||| ||||||||||    
T  18227186 aatgcattgaaaatcgaaatatttgacttttat-gaagaataattacttattttataatgtttaaagagtg 18227117  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 3882754 - 3882705
Alignment:
Q  60 aaatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaa 109  Q
    ||||||||| ||||||| ||| |||||| |||||| ||||||||||||||    
T  3882754 aaatgttaacgagtgcccccgggacactctttaagaaccataagtagtaa 3882705  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 37617431 - 37617499
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagt 193  Q
    |||| ||||||||| |||| |||| ||||||||  |||||||||||||||||||  |||| |||||||||    
T  37617431 aatgtattggaaataaaaatattt-aatttttttaaagaataattatttattttaaaatgcttaaagagt 37617499  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 42924384 - 42924439
Alignment:
Q  58 gaaaatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaaatatt 114  Q
    ||||||||||| ||||| ||||| ||||| |||||||| |||||| |||||||||||    
T  42924384 gaaaatgttaacgagtgtctccgggacac-ttttaaggtccataaatagtaaatatt 42924439  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 53737836 - 53737909
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtgccct 198  Q
    ||||||||||||||| ||| |||||||||||||  ||||||||||  |||||||| || | ||||||||||||||    
T  53737836 aatgcattggaaatcgaaatatttgaatttttt-aaagaataatttcttattttggaacgcttaaagagtgccct 53737909  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 10576052 - 10575984
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtg 194  Q
    ||||||||||||||||||| ||||||  ||||| ||| |||||||| |||||||  |||| ||||||||||    
T  10576052 aatgcattggaaatcaaaatatttga--ttttttgaaaaataattacttattttaaaatgcttaaagagtg 10575984  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 47560763 - 47560708
Alignment:
Q  60 aaatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaaatatta 115  Q
    ||||||||| ||||||||| | |||||| |||||||||||||| |||||| |||||    
T  47560763 aaatgttaacgagtgcctctgagacactctttaaggaccataaatagtaagtatta 47560708  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 32692920 - 32692969
Alignment:
Q  60 aaatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaa 109  Q
    ||||||||| ||||||||||| |||||| |||||||||||| | ||||||    
T  32692920 aaatgttaacgagtgcctccgggacactctttaaggaccattaatagtaa 32692969  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 45984083 - 45984137
Alignment:
Q  121 aaaaatgcattggaaatcaaaacatttgaattttttcgaagaataattatttatttt 177  Q
    |||||| ||||||||||||||| |||| ||||||||  |||||||||||||||||||    
T  45984083 aaaaatacattggaaatcaaaatattt-aatttttt-aaagaataattatttatttt 45984137  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 3256671 - 3256736
Alignment:
Q  126 tgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaaga 191  Q
    ||||||||||||| |||||||||| ||||||  ||||||||||  |||||||| |||| |||||||    
T  3256671 tgcattggaaatcgaaacatttgactttttttaaagaataattgcttattttgaaatgcttaaaga 3256736  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 33887894 - 33887963
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtg 194  Q
    ||||||||| ||||  ||| |||||| ||||||  |||||||||||||||||||| |||| ||||||||||    
T  33887894 aatgcattgaaaattgaaatatttgactttttta-aagaataattatttattttggaatgcttaaagagtg 33887963  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 17112770 - 17112696
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaatttttt--cgaagaataattatttattttgtaatggttaaagagtgcc 196  Q
    ||||||||||||||||||| |||||| ||||||   ||| |||||||| ||||||||  ||| ||||||||||||    
T  17112770 aatgcattggaaatcaaaatatttgacttttttgaagaataataattacttattttgccatgcttaaagagtgcc 17112696  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 7750495 - 7750423
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtgcc 196  Q
    ||||||||||||||  |||||||||| ||||||  ||||||| ||  |  |||||||||| ||||||||||||    
T  7750495 aatgcattggaaattgaaacatttgacttttttttaagaatattttctccttttgtaatgtttaaagagtgcc 7750423  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 37167084 - 37167016
Alignment:
Q  124 aatgcattggaaatcaaaacatttgaattttttcgaagaataattatttattttgtaatggttaaagagtg 194  Q
    ||||||||||||||| ||  |||| |||||||| ||||||||||| ||||||||| |||| ||||||||||    
T  37167084 aatgcattggaaatcgaactattt-aatttttt-gaagaataattgtttattttgaaatgtttaaagagtg 37167016  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12954884 - 12954835
Alignment:
Q  43 acattttattttatggaaaatgttaatgagtgcctccgtgacacttttta 92  Q
    ||||||| |||||||||||||||||| ||||| ||||| |||||| ||||    
T  12954884 acatttttttttatggaaaatgttaacgagtgtctccgagacactcttta 12954835  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 50604083 - 50604026
Alignment:
Q  159 aagaataattatttattttgtaatggttaaagagtgcccttgagacaactcgttaacaa 217  Q
    ||||||||||| ||| |||  ||||||||||||||||||| ||||| ||||||||||||    
T  50604083 aagaataattacttaatttagaatggttaaagagtgccctggagac-actcgttaacaa 50604026  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 46188549 - 46188602
Alignment:
Q  61 aatgttaatgagtgcctccgtgacactttttaaggaccataagtagtaaatatt 114  Q
    |||||||| |||||| |||| |||| || |||||||||||||||||||| ||||    
T  46188549 aatgttaacgagtgcttccgagacatttattaaggaccataagtagtaagtatt 46188602  T

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