View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17257_low_8 (Length: 447)
Name: NF17257_low_8
Description: NF17257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17257_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 43918395 - 43918815
Alignment:
| Q |
11 |
caaaggaggagaaaaacatacaaaatttttatttgtatcacaattgagacttttgcnnnnnnngaatcctataaaagaactagatcgagtatttgtttct |
110 |
Q |
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| T |
43918395 |
caaaggaggagaaaaacatacaaaatttttatttgtatcacaattgagacttttgctttttttgaatcctataaaagaactagatcgagtatttgtttct |
43918494 |
T |
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| Q |
111 |
tgaacttctttgttgatctctttctttgttttagtcgaaaatggtcgaggcggaagattcatatatctaggttgttccttacaagacgcagtgttgtttt |
210 |
Q |
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| T |
43918495 |
tgaacttctttgttgatctctttctttgttttagtcgaaaatggtcgaggcggaagattcatatatctaggttgttccttataagacgcagtgttgtttt |
43918594 |
T |
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| Q |
211 |
tcttgtcatgtatctgcaatggaagtataactccattagagaaaagttcatcagctgaagatgtttcaaattcaatgtttttgccagtgatgaattcaaa |
310 |
Q |
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| T |
43918595 |
tcttgtcatgtatctgcaatggaagtataactccattagagaaaagttcatcagctgaagatgttccaaattcaatgtttttgctagtgatgaattcaaa |
43918694 |
T |
|
| Q |
311 |
atcagtatttgattcaagaagcagtgtgtctctacaagaaacaacatcatgtttcattggtgaaacatcattggagaaagaaaaacgaggtgaagatgtt |
410 |
Q |
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| T |
43918695 |
atcagtatttgattcaagaagcagtgtgtctctacaagaaacaacatcatgtttcattggtgaaacatcattggagaaagaaaaacgaggtgaagatgtt |
43918794 |
T |
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| Q |
411 |
tgagaacacataactgaaaac |
431 |
Q |
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| T |
43918795 |
tgagaacacataactgaaaac |
43918815 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 31328701 - 31328743
Alignment:
| Q |
243 |
ccattagagaaaagttcatcagctgaagatgtttcaaattcaa |
285 |
Q |
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| T |
31328701 |
ccattagagaaaagttcatcagctgaagatgattcaaactcaa |
31328743 |
T |
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