View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17258_high_5 (Length: 356)
Name: NF17258_high_5
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17258_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 41308654 - 41308983
Alignment:
| Q |
20 |
gtgtggtagaagcagaaaagggtctagaacaaagagtttaagtgattttattgattctcctatgaagtgttctttagaccctcttgaatcttataagcat |
119 |
Q |
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| T |
41308654 |
gtgtggtagaagcagaaaagggtctagaacaaagagtttaagtgattttattgattctcctatgaagtgttctttagaccctcttgaatcttataagcat |
41308753 |
T |
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| Q |
120 |
caagggttcaatcctctatttgaagtctcagcagaatctgaattcaacaggtttagatcttctccaccaccaaagttcaagtttctaagggatgcagagg |
219 |
Q |
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| T |
41308754 |
caagggttcaatcctctctttgaagtctcagcagaatctgaattcaacaggtttagatcttctccaccaccaaagttcaagtttctaagggatgcagagg |
41308853 |
T |
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| Q |
220 |
agaaattgtatagaagattgatggaggaatctagaagaaaagcactagaggaaaatcatggttctgtttcagaatttgaggttaaaaattcacttaatgt |
319 |
Q |
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| T |
41308854 |
agaaattgtatagaagattgatggaggaatctaaaagaaaagcactagaggaaaatcatggttctgtttcagaatttgaggttaaaaattcacttaatgt |
41308953 |
T |
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| Q |
320 |
aacaaaggctacaactacaagttcatctca |
349 |
Q |
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| T |
41308954 |
aacaaaggctacaactacaagttcatctca |
41308983 |
T |
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