View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17258_low_1 (Length: 908)

Name: NF17258_low_1
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17258_low_1
NF17258_low_1
[»] chr5 (9 HSPs)
chr5 (117-893)||(23152306-23153087)
chr5 (11-100)||(24793501-24793594)
chr5 (11-100)||(43405992-43406085)
chr5 (11-99)||(30327682-30327774)
chr5 (502-623)||(23136062-23136183)
chr5 (44-100)||(15409214-15409272)
chr5 (48-100)||(28282401-28282455)
chr5 (539-623)||(23292597-23292681)
chr5 (13-76)||(31478702-31478767)
[»] chr7 (7 HSPs)
chr7 (44-100)||(27227252-27227310)
chr7 (47-101)||(23198512-23198568)
chr7 (54-100)||(25091232-25091280)
chr7 (52-100)||(9667219-9667269)
chr7 (47-90)||(37307724-37307769)
chr7 (22-76)||(13054633-13054689)
chr7 (47-76)||(27744643-27744672)
[»] chr4 (10 HSPs)
chr4 (11-100)||(35010371-35010464)
chr4 (11-99)||(31351662-31351754)
chr4 (15-100)||(50263978-50264067)
chr4 (34-100)||(28091317-28091387)
chr4 (52-100)||(13538243-13538293)
chr4 (11-99)||(35130600-35130692)
chr4 (47-100)||(7921649-7921704)
chr4 (48-101)||(9460227-9460282)
chr4 (55-100)||(49479529-49479576)
chr4 (45-99)||(40981775-40981831)
[»] chr8 (3 HSPs)
chr8 (15-101)||(28300118-28300208)
chr8 (15-100)||(13147732-13147820)
chr8 (50-100)||(19756416-19756468)
[»] chr3 (7 HSPs)
chr3 (44-101)||(51829544-51829603)
chr3 (48-100)||(38745281-38745335)
chr3 (48-100)||(41259941-41259995)
chr3 (50-101)||(11988918-11988971)
chr3 (48-95)||(52910381-52910430)
chr3 (47-76)||(17002961-17002990)
chr3 (24-100)||(44651930-44652010)
[»] scaffold0166 (1 HSPs)
scaffold0166 (11-100)||(35884-35977)
[»] chr6 (5 HSPs)
chr6 (46-97)||(7326322-7326375)
chr6 (15-99)||(12606681-12606769)
chr6 (44-90)||(6922632-6922680)
chr6 (47-100)||(5925646-5925701)
chr6 (47-94)||(20599389-20599435)
[»] chr2 (7 HSPs)
chr2 (52-101)||(9198918-9198967)
chr2 (36-99)||(14368405-14368472)
chr2 (47-100)||(34319803-34319858)
chr2 (54-99)||(37123628-37123675)
chr2 (47-97)||(44287856-44287908)
chr2 (47-100)||(8915629-8915684)
chr2 (47-100)||(31068881-31068936)
[»] chr1 (3 HSPs)
chr1 (16-96)||(29204679-29204763)
chr1 (47-100)||(8757262-8757317)
chr1 (47-89)||(2661632-2661676)
[»] scaffold0178 (1 HSPs)
scaffold0178 (47-88)||(9703-9746)


Alignment Details
Target: chr5 (Bit Score: 688; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 117 - 893
Target Start/End: Complemental strand, 23153087 - 23152306
Alignment:
Q  117 tccgtaacttgtatttccacatttataggtgctttttagtctactttgttattgagatcccatctttctgagatgccacttatgatttccaacacataag 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23153087 tccgtaacttgtatttccacatttataggagctttttagtctactttgttattgagatcccatctttctgagatgccacttatgatttccaacacataag 23152988  T
Q  217 aagaaaaatttgattttcacaaacaatactaattaattatatatcaaactaatataatcatgtacttaaatgagtaaattaaccaattcacatgtcattg 316  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23152987 aagaaaaatttgattttcacaaacaataccaattaattatatatcaaactaatataatcatgtacttaaatgattaaattaaccaattcacatgtcattg 23152888  T
Q  317 tcatttcacattatgagttcatcatcatcaattaaattattggtttttggtagagaagataataccccgagtgcataaaatatctgccacgtttatggat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||| ||||||||     
T  23152887 tcatttcacattatgagttcatcatcatcaattaaattattggtttttggtagagaagataataccctgcgagaataaaatatctgccacttttatggaa 23152788  T
Q  417 cgggtagcaatttatcacactatcgacaacaacttgttgacttaaattacaaaaatattatccacacgtttgtgcactaatagagtaaagtactatggat 516  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23152787 cgggtagcaatttatcacactattgacaacaacttgttgacttaa-tcacaaaaatattatccacacgtttgtgcactaatagagtaaagtactatggat 23152689  T
Q  517 tgttacaaaattgtactagtgaccatagtttcatttatgcttttggttcaaaataccaaagaatggggagaagatgggcatgtcattgtttgtaagattg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23152688 tgttacaaaattgtactagtgaccatagtttcatttatgcttttggttcaaaataccaaagaatggggagaagatgggcatgtcattgtttgtaagattg 23152589  T
Q  617 ctcaggtcaggatcctgcctttaccttgttatctttcaatattttgaagtagaatttaccactgttaagggatcatacattcacgcagtcaaacataagt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23152588 ctcaggtcaggatcctgcctttaccttgttatctttcaatattttgaagtagaatttaccactgttaggggatcatacattcacgcagtcaaacataagt 23152489  T
Q  717 ggccgttccatcttgattggacgagccaaaaaatttaaattttagtaatttgaaatactaaacttgaattttgaccgtccgatctaaagtgaactgtcct 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |    
T  23152488 ggccgttccatcttgattggacgagccaaaaaatttaaattttagtaatttgaaatattaaacttgaattttgaccgtctgatctaaagtgaactgtctt 23152389  T
Q  817 gactacatgaatacaagaaatgt------ttatgagtttgatttttgtactaattttgctttcgtttctgattttgtgataac 893  Q
    |||||||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23152388 gactacatgaatgcaagaaatgtttataattatgagtttgatttttgtactaattttgctttcgtttctgattttgtgataac 23152306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 24793501 - 24793594
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaacc--agattccccacttctccacacataatgt--gtgaatctagccactagactacttgac 100  Q
    ||||||||||||||||| | | || ||| ||||||  ||||| |||| ||||| |||||||||||  |||||||||||||||||||||||||||    
T  24793501 cagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgac 24793594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 43406085 - 43405992
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaacc--agattccccacttctccacacataatg--tgtgaatctagccactagactacttgac 100  Q
    |||||||||||||||||||  |||  |||||||||  |||||| ||||||||||||||||||||  ||||| |||| ||||||||||| |||||    
T  43406085 cagagataatttgtgcaaggaccggagttcgaacctcagattctccacttctccacacataatgtgtgtgagtctaaccactagactaattgac 43405992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 30327682 - 30327774
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaaccag--attccccacttctccacacataat--gtgtgaatctagccactagactacttga 99  Q
    |||||||||||| |||| | |||| ||||||||||    |||| |||||||||||||||||||  |||||||||||||||||| |||||||||    
T  30327682 cagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacacataatatgtgtgaatctagccactaaactacttga 30327774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 502 - 623
Target Start/End: Complemental strand, 23136183 - 23136062
Alignment:
Q  502 taaagtactatggattgttacaaaattgtactagtgaccatagtttcatttatgcttttggttcaaaataccaaagaatggggagaagatgggcatgtca 601  Q
    |||||| | |||| |||||| | ||||| ||| ||  |||||||||||||  | |||||| | ||||||||  |||  |||||||| ||||| |||| ||    
T  23136183 taaagtgcaatgggttgttatagaattgcacttgtagccatagtttcattccttcttttgatccaaaatacacaagggtggggagatgatggacatgcca 23136084  T
Q  602 ttgtttgtaagattgctcaggt 623  Q
    ||||||||||||||||||||||    
T  23136083 ttgtttgtaagattgctcaggt 23136062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 15409214 - 15409272
Alignment:
Q  44 ccagattccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||||||||||||||  ||||||||||||||  ||| ||||||||||||||||||||    
T  15409214 ccagattccccacttctttacacataatgtgtgtgaatttagccactagactacttgac 15409272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 28282401 - 28282455
Alignment:
Q  48 attccccacttctccacacataat--gtgtgaatctagccactagactacttgac 100  Q
    ||||| ||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  28282401 attcctcacttctccacacataatatgtgtgaatctaaccactagactacttgac 28282455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 539 - 623
Target Start/End: Original strand, 23292597 - 23292681
Alignment:
Q  539 ccatagtttcatttatgcttttggttcaaaataccaaagaatggggagaagatgggcatgtcattgtttgtaagattgctcaggt 623  Q
    |||||||||| || ||||||||| ||| ||| ||  ||| ||||||||| || || ||| ||| |||||||||||||||||||||    
T  23292597 ccatagtttctttcatgcttttgcttccaaacacacaaggatggggagaggaaggacatttcactgtttgtaagattgctcaggt 23292681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 31478767 - 31478702
Alignment:
Q  13 gagataatttgtgcaagagccgaggttcgaac--cagattccccacttctccacacataatgtgtg 76  Q
    ||||||||||||||||| ||||  ||||||||  | ||||| ||||||||| ||||||||||||||    
T  31478767 gagataatttgtgcaagggccggagttcgaacttcggattctccacttctctacacataatgtgtg 31478702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 27227310 - 27227252
Alignment:
Q  44 ccagattccccacttctccacacataatgtg--tgaatctagccactagactacttgac 100  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27227310 ccagattccccacttctccacacataatgtgtttgaatctagccactagactacttgac 27227252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 23198568 - 23198512
Alignment:
Q  47 gattccccacttctccacacataatgtgtg--aatctagccactagactacttgacc 101  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||    
T  23198568 gattccccacttctccacacataatgtgtgtaaatctagccactaggctatttgacc 23198512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 25091232 - 25091280
Alignment:
Q  54 cacttctccacacataatgtg--tgaatctagccactagactacttgac 100  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  25091232 cacttcttcacacataatgtgtgtgaatctagccactagactacttgac 25091280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 9667269 - 9667219
Alignment:
Q  52 cccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||||||||| ||||||||||||  |||| |||||||||||||||||||    
T  9667269 cccacttctccatacataatgtgtgtgaatccagccactagactacttgac 9667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 37307724 - 37307769
Alignment:
Q  47 gattccccacttctccacacataatgtg--tgaatctagccactag 90  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  37307724 gattccccacttctccacaaataatgtgtttgaatctagccactag 37307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 13054633 - 13054689
Alignment:
Q  22 tgtgcaagagccgaggttcgaacc--agattccccacttctccacacataatgtgtg 76  Q
    |||||| | |||| ||||||||||  ||||| |||||||||||||||||||||||||    
T  13054633 tgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtg 13054689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 27744643 - 27744672
Alignment:
Q  47 gattccccacttctccacacataatgtgtg 76  Q
    ||||||||||||||||||||||||||||||    
T  27744643 gattccccacttctccacacataatgtgtg 27744672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 35010464 - 35010371
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaac--cagattccccacttctccacacataatgtg--tgaatctagccactagactacttgac 100  Q
    ||||||||||||||||| ||| || |||||||||  | |||| |||||||||||||||||||||||  |||||||||||||||  |||||||||    
T  35010464 cagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgtgtatgaatctagccactatgctacttgac 35010371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 31351754 - 31351662
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaac--cagattccccacttctccacacataat--gtgtgaatctagccactagactacttga 99  Q
    ||||||||||||||||| | | || |||||||||  | |||| |||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  31351754 cagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtgaatctagccactagactacttga 31351662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 50264067 - 50263978
Alignment:
Q  15 gataatttgtgcaagagccgaggttcgaa--ccagattccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    ||||||||||||| | |||| || |||||  || |||||||||||||||||||||| |||||||  |||||||||||||| |||||||||    
T  50264067 gataatttgtgcaggggccggggctcgaaacccggattccccacttctccacacatgatgtgtgtgaatctagccactaggctacttgac 50263978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 28091387 - 28091317
Alignment:
Q  34 gaggttcgaac--cagattccccacttctccacacataatg--tgtgaatctagccactagactacttgac 100  Q
    |||||||||||  || |||||||||||||||||||||||||  |||||||||||| | |||||||||||||    
T  28091387 gaggttcgaactccaaattccccacttctccacacataatgtgtgtgaatctagcaattagactacttgac 28091317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 13538293 - 13538243
Alignment:
Q  52 cccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  13538293 cccacttctccatacataatgtgtgtgaatctagccactagactacttgac 13538243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 35130692 - 35130600
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaa--ccagattccccacttctccacacataa--tgtgtgaatctagccactagactacttga 99  Q
    ||||||||||||||||| | |||| ||||||||  || |||| ||||||||| ||||||| |  |||||||||||||||||  ||||||||||    
T  35130692 cagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaatctagccacatgactacttga 35130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 7921649 - 7921704
Alignment:
Q  47 gattccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||    
T  7921649 gattcctcacttctccacacatcatgtgtgtgaatttagccactagactacttgac 7921704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 9460227 - 9460282
Alignment:
Q  48 attccccacttctccacacataa--tgtgtgaatctagccactagactacttgacc 101  Q
    |||||||| ||||||||||||||  ||||||||| ||||||||| |||||||||||    
T  9460227 attccccatttctccacacataatgtgtgtgaatatagccactaaactacttgacc 9460282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 49479529 - 49479576
Alignment:
Q  55 acttctccacacataatgtg--tgaatctagccactagactacttgac 100  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||    
T  49479529 acttctccacacataatgtgtgtgaatctaaccactagactacttgac 49479576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 40981831 - 40981775
Alignment:
Q  45 cagattccccacttctccacacataatgt--gtgaatctagccactagactacttga 99  Q
    ||||||| |||||||||||||||||||||  || |||||| ||||||| ||||||||    
T  40981831 cagattctccacttctccacacataatgtgcgtaaatctaaccactaggctacttga 40981775  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 28300118 - 28300208
Alignment:
Q  15 gataatttgtgcaagagccgaggttcgaacca--gattccccacttctccacacataa--tgtgtgaatctagccactagactacttgacc 101  Q
    ||||||||||||| | |||| ||||||||||   ||||||||||||||||| ||||||  ||||||||||||||||| || ||||||||||    
T  28300118 gataatttgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagccacaaggctacttgacc 28300208  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 13147820 - 13147732
Alignment:
Q  15 gataatttgtgcaagagccgaggttcgaacc--agattccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    ||||||||||||| || |||| |||||||||  | ||| | ||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  13147820 gataatttgtgca-gaaccgaagttcgaaccccaaatttcacacttcttcacacataatgtgtgtgaatctagccactagactacttgac 13147732  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 19756468 - 19756416
Alignment:
Q  50 tccccacttctccacacataatg--tgtgaatctagccactagactacttgac 100  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||| ||||    
T  19756468 tccccacttctccacacataatgtgtgtgaatctagccactaggctacctgac 19756416  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 51829603 - 51829544
Alignment:
Q  44 ccagattccccacttctccacacataatg--tgtgaatctagccactagactacttgacc 101  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  51829603 ccagattcctcacttctccacacataatgtatgtgaatctagccactatactacttgacc 51829544  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 38745335 - 38745281
Alignment:
Q  48 attccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  38745335 attccccacttctccacacaaaatgtgtgtgaatctagccactagactacttgac 38745281  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 41259995 - 41259941
Alignment:
Q  48 attccccacttctccacacataatg--tgtgaatctagccactagactacttgac 100  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  41259995 attccccacttctccacacataatgtgtgtgaatctagccactaggctacttgac 41259941  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 11988971 - 11988918
Alignment:
Q  50 tccccacttctccacacataatgtgtg--aatctagccactagactacttgacc 101  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  11988971 tccccacttctccacacataatgtgtgtgaatctagccactagactaattgacc 11988918  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 52910430 - 52910381
Alignment:
Q  48 attccccacttctccacacataatg--tgtgaatctagccactagactac 95  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  52910430 attccccacttctccacacataatgtgtgtgaatctagtcactagactac 52910381  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 17002961 - 17002990
Alignment:
Q  47 gattccccacttctccacacataatgtgtg 76  Q
    ||||||||||||||||||||||||||||||    
T  17002961 gattccccacttctccacacataatgtgtg 17002990  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 44652010 - 44651930
Alignment:
Q  24 tgcaagagccgaggttcgaacca--gattccccacttctccacacata-atgtgtgaa-tctagccactagactacttgac 100  Q
    |||| |||||||||||||||||   ||| |||||||||||||||  || ||||||||| |||||||||||| |||||||||    
T  44652010 tgcaggagccgaggttcgaaccccggataccccacttctccacatttatatgtgtgaactctagccactaggctacttgac 44651930  T

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Target: scaffold0166 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 35884 - 35977
Alignment:
Q  11 cagagataatttgtgcaagagccgaggttcgaacc--agattccccacttctccacacataatgt--gtgaatctagccactagactacttgac 100  Q
    ||||||||||||||||| | | || ||| ||||||  ||||| |||| ||||| |||||||||||  |||||||||||||||||||||||||||    
T  35884 cagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgac 35977  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 7326375 - 7326322
Alignment:
Q  46 agattccccacttctccacacataatg--tgtgaatctagccactagactactt 97  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  7326375 agattccccacttctccacacataatgtgtgtgaatttagccactagactactt 7326322  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 12606681 - 12606769
Alignment:
Q  15 gataatttgtgcaagagccgaggttcgaacc--agattccccacttctccacacataa--tgtgtgaatctagccactagactacttga 99  Q
    ||||||||||| | ||  |||||||||||||  ||||||||||||||| |||| ||||  ||||||||||||||||||| ||| |||||    
T  12606681 gataatttgtgtaggaatcgaggttcgaaccccagattccccacttcttcacatataatgtgtgtgaatctagccactaaactgcttga 12606769  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 6922680 - 6922632
Alignment:
Q  44 ccagattccccacttctccacacataa--tgtgtgaatctagccactag 90  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  6922680 ccagattccccacttctccacatataatgtgtgtgaatctagccactag 6922632  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 5925646 - 5925701
Alignment:
Q  47 gattccccacttctccacacataa--tgtgtgaatctagccactagactacttgac 100  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||  ||||||||    
T  5925646 gattccccacttcttcacacataatgtgtgtgaatctagccactaggttacttgac 5925701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 20599435 - 20599389
Alignment:
Q  47 gattccccacttctccacacataatgtgtgaatctagccactagacta 94  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||    
T  20599435 gattccccacttctccacacataa-gtgtgagtctaaccactagacta 20599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 9198967 - 9198918
Alignment:
Q  52 cccacttctccacacataatgtgtgaatctagccactagactacttgacc 101  Q
    |||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  9198967 cccacttctccacacataatgtgtgaatttagccacgaggctacttgacc 9198918  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 14368472 - 14368405
Alignment:
Q  36 ggttcgaacca--gattccccacttctccacacataatg--tgtgaatctagccactagactacttga 99  Q
    |||||||||||  ||||||||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  14368472 ggttcgaaccacggattccccacttctccacacataatgtgtgtgaatctagccactaaactatttga 14368405  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 34319858 - 34319803
Alignment:
Q  47 gattccccacttctccacacataatgtgtg--aatctagccactagactacttgac 100  Q
    |||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  34319858 gattcctcacttctctacacataatgtgtgtgaatctagccactagactacttgac 34319803  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 37123628 - 37123675
Alignment:
Q  54 cacttctccacacataatgtg--tgaatctagccactagactacttga 99  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  37123628 cacttctccacacataatgtgtgtgaatctagccactagactacttga 37123675  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 44287856 - 44287908
Alignment:
Q  47 gattccccacttctccacacataa--tgtgtgaatctagccactagactactt 97  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  44287856 gattccccacttctccacacataatgtgtgtgaatctagccaataggctactt 44287908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 8915629 - 8915684
Alignment:
Q  47 gattccccacttctccacacataatgtg--tgaatctagccactagactacttgac 100  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||| |||||||    
T  8915629 gattccccacttctccataaataatgtgtgtgaatctagccactagaccacttgac 8915684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 31068936 - 31068881
Alignment:
Q  47 gattccccacttctccacacataa--tgtgtgaatctagccactagactacttgac 100  Q
    |||||||||||||||||||| |||  |||||||||||| ||||||||||| |||||    
T  31068936 gattccccacttctccacacttaatgtgtgtgaatctaaccactagactatttgac 31068881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 29204679 - 29204763
Alignment:
Q  16 ataatttgtgcaagagccgaggttcgaa--ccagattccccacttctccacacata-atgtgtgaa-tctagccactagactact 96  Q
    ||||||| ||||||||||||||||||||  |||||| |||||||||||||||  ||  |||||||| |||||||||||| |||||    
T  29204679 ataatttatgcaagagccgaggttcgaatcccagataccccacttctccacatttagttgtgtgaactctagccactaggctact 29204763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 8757317 - 8757262
Alignment:
Q  47 gattccccacttctccacacataatg--tgtgaatctagccactagactacttgac 100  Q
    |||||||||| |||||||||||||||  |||||||||| ||||||| |||||||||    
T  8757317 gattccccacgtctccacacataatgtgtgtgaatctaaccactaggctacttgac 8757262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 2661676 - 2661632
Alignment:
Q  47 gattccccacttctccacacata--atgtgtgaatctagccacta 89  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  2661676 gattcctcacttctccacacataatatgtgtgaatctagccacta 2661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 9746 - 9703
Alignment:
Q  47 gattccccacttctccacacataatg--tgtgaatctagccact 88  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  9746 gattccccacttctccacacataatgtgtgtgaatctagccact 9703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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